Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03017 ATGTCGTTGCCATCTCTAGATAGAAGACGTTCAAATGGTGAAATAAGGAACTTGGCCTCAATTTCTAGCAGTCTTTTACCTGCACTTGGAACTACCCCTGACGAAGGTTACTTCAACCTAAAAAAATATATCATTGCTCCCTATGATCGCAGATATCGATTGTGGCAAACGTTCCTAGTGGCATTGGTGGTATATTCTGCATGGTCATCTCCATTCGAGTTAGCTTTCAGAGAGATGTCAATTGAGCCGTTGTTGATCACGGATCTCTTTGTCGATGCTTTCTTTGCATTTGATATAATCCTAACTTTCTTTGTGGCTTACTTGGATACATCGACTTATTTCCTCGTTGATGACCATAAGAAGATTGCAATCAGGTACGTCAAACATTTACACTTCCCCATGGATCTAGCTTCCACGCTACCATTTCAGCAGATATACCAACTCTTCTCAAGGTTAGAGAAAGACATAAGGGTTAGCTACTCGTTAACAAGAGCCTCTAAACTTTTATGCGTTACACTATTTGCAGTGCACTTCACAGGCTGCATGTATTTTTGGTTGGCTTTCCATCACAAATCACCCGAAAACACATGGATAGGGAAGCAGGTAGAGGATTTTAAGCATGGGAGCGTCCGTTCGGGTTATACTTACTCCATGTACTGGTCTATTGTAACCCTTAGCACTGTTGGTTATGGAGATTTACATGCAGAAAATACAACAGAGAAGGTTTTCAATATTTTTTATATGTTGTTTAACATCGGCCTCACTGCATATATTATCGGAAACATGACAAATCTGGTGGTTCATAGCTCTGTCGGAACCTTTGCCATGAGGGATGCCTTCAACAAAATATTACAATATGCGAGCAAAAATAGACTACCCGAAGGTTTGAAGGAGCAAATGTTGGCACATACACAACTGAAGTTTAAGACAGCAGAGTTACAGCAAGAAGAAGTGCTACAAGACCTGCCTAAAGCAATTAGAGCCGGTATTGCTCAGCATCTTTTCCACAACGTGGTTGAAAAAACATATCTATTTAAAGGACTCTCAGATGATTTTATCTCCCAGCTGGTATCAGATATGAAAGCAGAATACTACCCTTCTAAGGTTGACATTATCTTGCAAAATGAGATGCCAGCATATTTCTACATTTTGGTATCTGGATCGGTGGATGTGTTGACATACAAGAATGGGTCTGAACAGTTTTTGTTCAAACTAGAATCTGGAAGCATGGCAGGAGAAATAGGTGTGATGTTTAATATCCCACAACCTTATACAGTGAGAAGTAGAAGACTCTCACAGGTTATACGAATCAATCATCATCATTTCAAGCAAATGGTGAAACCATTTAGTAAAGATGGGAAGGCAATCATCAGCAACTTCACTCAGTTTTTGAAGGGCCTAGGTGGAGGGGTGTTGGAAGAAATACCGCATGTAGCAGAATTTTTGAGTGACCTGCCTGACAAGCGCCCAACACAAAATGACAGCACATGCGATGAAGATGATCAATACAAAGGTAACCTTAATCACTATACTAGACAAACAGAAAATTCCAGTCCACTGTCAAACCTAGACCCCATTAGAGTCAAAATTCACGGACATCAACCAAATGAAAAAATTAAAAATGGAACAACACCGAAGCTCATTATTCTACCAGATTCAGTCGAAGATCTTTTCAGAGTAGCAGAGAAAAAGTTTGGAAAAAGAGGAAGCAAAATTGTTATGGCTGACGGCTCAGAAGTAGAAGATCTAAGTGCCTTAAGAGACAATGATGAGTTATATATCCTCTAA 1788 0.3982 MSLPSLDRRRSNGEIRNLASISSSLLPALGTTPDEGYFNLKKYIIAPYDRRYRLWQTFLVALVVYSAWSSPFELAFREMSIEPLLITDLFVDAFFAFDIILTFFVAYLDTSTYFLVDDHKKIAIRYVKHLHFPMDLASTLPFQQIYQLFSRLEKDIRVSYSLTRASKLLCVTLFAVHFTGCMYFWLAFHHKSPENTWIGKQVEDFKHGSVRSGYTYSMYWSIVTLSTVGYGDLHAENTTEKVFNIFYMLFNIGLTAYIIGNMTNLVVHSSVGTFAMRDAFNKILQYASKNRLPEGLKEQMLAHTQLKFKTAELQQEEVLQDLPKAIRAGIAQHLFHNVVEKTYLFKGLSDDFISQLVSDMKAEYYPSKVDIILQNEMPAYFYILVSGSVDVLTYKNGSEQFLFKLESGSMAGEIGVMFNIPQPYTVRSRRLSQVIRINHHHFKQMVKPFSKDGKAIISNFTQFLKGLGGGVLEEIPHVAEFLSDLPDKRPTQNDSTCDEDDQYKGNLNHYTRQTENSSPLSNLDPIRVKIHGHQPNEKIKNGTTPKLIILPDSVEDLFRVAEKKFGKRGSKIVMADGSEVEDLSALRDNDELYIL 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03017 595 CDD CAP_ED 344 446 IPR000595 -
Car05g03017 595 Gene3D Jelly Rolls 309 465 IPR014710 -
Car05g03017 595 Pfam Cyclic nucleotide-binding domain 366 446 IPR000595 -
Car05g03017 595 SMART cnmp_10 344 461 IPR000595 -
Car05g03017 595 SUPERFAMILY cAMP-binding domain-like 274 463 IPR018490 -
Car05g03017 595 Pfam KHA, dimerisation domain of potassium ion channel 527 594 IPR021789 -
Car05g03017 595 ProSiteProfiles cAMP/cGMP binding motif profile. 344 463 IPR000595 -
Car05g03017 595 PANTHER POTASSIUM CHANNEL AKT1 22 594 IPR045319 GO:0005249|GO:0006813
Car05g03017 595 SUPERFAMILY Voltage-gated potassium channels 47 266 - -
Car05g03017 595 Gene3D - 144 268 - -
Car05g03017 595 ProSiteProfiles KHA domain profile. 527 595 IPR021789 -
Car05g03017 595 PANTHER POTASSIUM CHANNEL KAT3 22 594 - -
Car05g03017 595 Pfam Ion transport protein 53 265 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03017 Car-Chr5 75004397 75011078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03017 8 594 Ion Channels AT4G32650 56.019 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03017 K21867 - gmx:100794620 849.351