Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03013 ATGGGAGAGGTGGCAGTGATGCACTCTGAGCCTCTGCAGTTTGAGTGCAATGACATGAAGCTTATCAAAGAGAAAGATGTGTATAATCTACCATTGCCAGAGAGAGGATATATGGAATATGGATGTCAACATTACCGGAGAAGATGTCGTATTAGGGCTCCCTGTTGCAATGAGATATTTGATTGCCGCCATTGTCATAATGAGGCAAAAAATAGCATCAACATTGATCAGAAACACAGACACGACATTCCCCGCCATCAAGTCAAACAGGTCATATGTTCACTATGTGGAACAGAACAAGAGGTTCAGCAGAACTGTACCAATTGCGGTGTGTGCATGGGTAAATACTTCTGCGAGACGTGTAAGCTCTTTGACGATGATGTATCTAAGCAACAGTACCATTGCAGTGGTTGTGGAATTTGCAGAACCGGAGGATGTGAGAATTTCTTCCACTGCTACAAGTGTGGCTGTTGCTACTCAACTCTGCTGAAAAACAGTCACCCTTGCGTGGAGGGAGCAATGCATCACGATTGCCCTGTTTGTTTTGAGTACTTGTTTGAATCTGTTACCGATGTCACCGTCTTGCTTTGCGGACATACAATCCATAAGAGCTGTCTCAATGAAATGAGGGAACATTTCCAGTATGCATGTCCTTTGTGCTCAAAGTCAGTTTGTGATATGTCAAAGGTTTGGGAAAAAATTGACTTGGAGATTGCTGCTACACCAATGCCTGAACCATATCTTAATAAAATGGTTTGGATACTTTGCAATGATTGTGGCGAAAACTCACATGTTCAGTTTCATCTCGTTGCACAAAAGTGCTTGAACTGCAAATCCTACAACACACGACAAACAAGAGGCTGA 864 0.4282 MGEVAVMHSEPLQFECNDMKLIKEKDVYNLPLPERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNSINIDQKHRHDIPRHQVKQVICSLCGTEQEVQQNCTNCGVCMGKYFCETCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESVTDVTVLLCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKIDLEIAATPMPEPYLNKMVWILCNDCGENSHVQFHLVAQKCLNCKSYNTRQTRG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03013 287 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 20 287 - -
Car05g03013 287 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 20 287 - -
Car05g03013 287 ProSiteProfiles Zinc finger CHY-type profile. 35 111 IPR008913 GO:0008270
Car05g03013 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 239 IPR013083 -
Car05g03013 287 SUPERFAMILY Zinc hairpin stack 114 171 IPR037275 -
Car05g03013 287 ProSiteProfiles Zinc finger RING-type profile. 178 221 IPR001841 -
Car05g03013 287 ProSiteProfiles Zinc finger CTCHY-type profile. 113 177 IPR017921 -
Car05g03013 287 SUPERFAMILY CHY zinc finger-like 39 113 IPR037274 GO:0008270
Car05g03013 287 Pfam Zinc-ribbon 225 283 IPR039512 -
Car05g03013 287 Pfam Ring finger domain 177 220 IPR001841 -
Car05g03013 287 Pfam CHY zinc finger 42 123 IPR008913 GO:0008270
Car05g03013 287 Gene3D - 249 287 - -
Car05g03013 287 SUPERFAMILY RING/U-box 177 225 - -
Car05g03013 287 SMART ring_2 178 220 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03013 Car-Chr5 74973368 74978178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03013 40 283 C2H2 Transcription Factor Family AT3G18290 40.000 5.26e-51 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03013 K10144 - gmx:100812023 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03137 04 59536994 59540290 Car05g03013 05 74973368 74978178 PCT
Car05g03013 05 74973368 74978178 Car04g03083 04 58954111 58957593 PCT