Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03010 ATGTTCCGGAAAAATGCACTCCAAATCCACCCATTCATCTTTTCGAGATCGCACGCAAGAATTCCACAGCATCTCAGACAGCGATCTGCCGTTGCCATTAAATCAGAGTTCAATAAAAGAGCTTCCAAGATTGGCTATGGAATTCACCAAACCTCTCAAAAGCTTGCCAAGCTCGCCAAATTGGCCAAAAGGACTTCAGTGTTTGATGATCCAACCGTGGAAATTCAAGAGCTTACAAGTGTTATTAAACAAGATATTACCGCACTCAACTCTGCGGTTGTGGATCTTCAATTACTCAGTAACTCTAGAAACGAGAGTGGACATGACTCTACTGATACAACTAGCCATTCCACTACGGTTGTGGATGATCTGAAGACACGGTTGATGAGCACCACTAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGAACATGAGAGTAGAAGACAGTTGTTTTCATCCGCTGCCTCTAAGGATGCTGCAAATCCTTTCCTCCGTCAACGTCCATTAACTACAAGGTCGGCTGCTACTGCCAGTACTTCTAATGCCCCCGCACCTCCATGGGCTAGTGGGACATCATCTTCCCAGTTGCTTTCTAAAAAGCAAGAGGACGAGGAAAGTCAACCATTGTTACAACAGCAGCAGCAGCAGACAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGGAGCAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTCGGCAACATTTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAGAACATGGATGATACAATGGCAAATGTAGAGGGGGCACAAGGGGCGTTGTTGAAGTATCTGAGCAGCATATCTTCTAATAGGTGGTTGATGATCAAGATTTTCTTAATATTGATATTTTTTGTTACGGTTTTCTTATTCTTTGTGGCATAG 960 0.4323 MFRKNALQIHPFIFSRSHARIPQHLRQRSAVAIKSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTVEIQELTSVIKQDITALNSAVVDLQLLSNSRNESGHDSTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKEHESRRQLFSSAASKDAANPFLRQRPLTTRSAATASTSNAPAPPWASGTSSSQLLSKKQEDEESQPLLQQQQQQTVPLQDSYMQSRGAALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLSSISSNRWLMIKIFLILIFFVTVFLFFVA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03010 319 Pfam SNARE domain 263 315 IPR000727 -
Car05g03010 319 PANTHER SYNTAXIN-32-LIKE 24 318 - -
Car05g03010 319 MobiDBLite consensus disorder prediction 146 225 - -
Car05g03010 319 Gene3D - 33 282 - -
Car05g03010 319 ProSitePatterns Syntaxin / epimorphin family signature. 233 272 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car05g03010 319 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Car05g03010 319 SMART tSNARE_6 222 289 IPR000727 -
Car05g03010 319 SUPERFAMILY t-snare proteins 35 282 IPR010989 GO:0016020|GO:0016192
Car05g03010 319 PANTHER SYNTAXIN 24 318 IPR045242 -
Car05g03010 319 MobiDBLite consensus disorder prediction 171 202 - -
Car05g03010 319 CDD SNARE_syntaxin5 230 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03010 Car-Chr5 74953700 74958272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03010 34 319 SNARE and Associated Proteins AT3G24350 65.273 1.12e-127 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03010 K08490 - gmx:100777961 401.364