Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03009 ATGCAGTTCAAATCAACCCAATCATCATTTCGAGATCGTACACATGAATTTCACACCATTGCAGAGAGGTTGAAGAAATCAGCATCAAATGGACCTACCAGTAGTGCCCCTGGTCcttcatcttcttctccttcttcttcttctccatcttcttcCAGATTGGACGATCATCGATCTGCCGTTGCAAATCAATCGGAGTTTAATAGAAGAGCTTCCAAGATTGGTTATGGAATTCACCAAACCTCTCAAAAACTCTCCAAGCTCGCAAAATTGGCGAAAAGGACTTCAGTTTTCGACGATCCGACCATGGAAATTCAAGAGCTTACAAGTGTAATTAAGCAAGATATTACCGCACTCAACTCTGCGGTTGTGGATCTTCAATTAGTCAGCAACTCTAGAAATGAGAGTGGAAATGTTTCTACCGATACAACTAGTCATTCCACTACGGTTGTAGATGATCTGAAGACTCGACTGATGAGCACTACCAAAGAATTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGTGCATGAGAATAGAAGACAACTGTTTTCGTCTACTGCCTCTAAGGATTCTGCAAATCCTTTCATTCGGCAACGTCCGTTAGCTACAAAGTCAACTGCTAGTACTTCTAGTGCCCCCGCACCTCCATGGGCTAGTGGGAAGCAGGTGGGTGGGGAGAGTCAACCATTgctgcaacaacaacagcaacagcagcagcagATAGTTCCATTGCAGGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCGACTATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACGCTTGTCTCCCAGCAAGGAGAGATTGCCATCAGGATTGATGAGAACATGGATGATACATTGGCAAATGTAGAGGGGGCACAAGGGGCTTTATTAAAATATCTGAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTGATGTTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1026 0.3928 MQFKSTQSSFRDRTHEFHTIAERLKKSASNGPTSSAPGPSSSSPSSSSPSSSRLDDHRSAVANQSEFNRRASKIGYGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLVSNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSSTASKDSANPFIRQRPLATKSTASTSSAPAPPWASGKQVGGESQPLLQQQQQQQQQIVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLMFFLMVFLFFVA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03009 341 PANTHER SYNTAXIN-32-LIKE 2 340 - -
Car05g03009 341 MobiDBLite consensus disorder prediction 26 58 - -
Car05g03009 341 MobiDBLite consensus disorder prediction 9 23 - -
Car05g03009 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Car05g03009 341 CDD SNARE_syntaxin5 252 325 - -
Car05g03009 341 Pfam SNARE domain 285 337 IPR000727 -
Car05g03009 341 PANTHER SYNTAXIN 2 340 IPR045242 -
Car05g03009 341 MobiDBLite consensus disorder prediction 1 58 - -
Car05g03009 341 MobiDBLite consensus disorder prediction 205 239 - -
Car05g03009 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car05g03009 341 SUPERFAMILY t-snare proteins 64 304 IPR010989 GO:0016020|GO:0016192
Car05g03009 341 MobiDBLite consensus disorder prediction 205 219 - -
Car05g03009 341 Gene3D - 60 304 - -
Car05g03009 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Car05g03009 341 SMART tSNARE_6 244 311 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03009 Car-Chr5 74945102 74949793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03009 1 341 SNARE and Associated Proteins AT3G24350 62.567 1.34e-143 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03009 K08490 - gmx:100777961 466.463