Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03002 ATGGGTGTGGATTATTATAATATATTGAAGGTGTATAAAAATGCTACAGAAGATGATTTGAAGAAAGCATATAGAAAATTGGCTATGAAATGGCATCCTGACAAGAACCCCACCAACAAAAAAGAAGCTGAAGCCAATTTCAAACAAATCTCTGAGGCTTATGCGGTATTGAGTGATCCTCAAAGAAGGATGGTTTATGATCAACTTGGAGAGCAAGGGTTGAAAGATAGGCCACCACCAGAAAATGAGTCAACAAGTGGTTTTTCTTCAAGAAGTGCAGAGGATATCTTTGCAGAATTCTTTGGAAGTAGTCCTTTGAATTTTGGATCATCTGGACCAGGTAGGTCAAAGAGATTCCCATCTGATGGTGGTGCAGGAGGAGGTGCATTTAGTGGATTCAGCGGAAATGACTTCAATTTTAGAACACATAGCGAAAGAGCAACTATGCCGAAGAAACCGCCACCTGTGGAAACCAAATTGGCTTGTAGCTTGGAGGAGTTGTATTCTGGATCTAAAAGGAAAATGAAGATCTCAAGGACTATAATGGATGCATACGGAAAGGAAATTAAAGATGCAGAGATATTAAGCATTGAAGTAAAACCAGGATGGAAAAAAGGGACAAAGATTACATTTCCAGATAAAGGGAATCAACAAAAAAATCAACTACCAGCAGACCTAGTATTTGTGATTGATGAGAAGCCTCATGAATTGTTCAAGAGAGATGGAAATGATCTCATTGTGAACCAAAGCATAACACTTGCAGAGGCTATTGGAGGAACTTCGGTGTATCTTAAAACACTAGACAAACGTAGTTTATGCGTCCCGGTGAAAGACATTGTTAGTCCTGGTTATGAGTTTGTTGTTGCTAATGAAGGAATGCCAATAACTAAAGAGCCTGGTCATAGGGGTGATTTGAAGATTATTTTTGAAGTTAAGTTTCCTACAAAATTGACACCAGAACAACGTGCTGGACTAAAGCGGGCATTGGGAGGTTGA 996 0.3926 MGVDYYNILKVYKNATEDDLKKAYRKLAMKWHPDKNPTNKKEAEANFKQISEAYAVLSDPQRRMVYDQLGEQGLKDRPPPENESTSGFSSRSAEDIFAEFFGSSPLNFGSSGPGRSKRFPSDGGAGGGAFSGFSGNDFNFRTHSERATMPKKPPPVETKLACSLEELYSGSKRKMKISRTIMDAYGKEIKDAEILSIEVKPGWKKGTKITFPDKGNQQKNQLPADLVFVIDEKPHELFKRDGNDLIVNQSITLAEAIGGTSVYLKTLDKRSLCVPVKDIVSPGYEFVVANEGMPITKEPGHRGDLKIIFEVKFPTKLTPEQRAGLKRALGG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03002 331 CDD DnaJ_C 154 317 - -
Car05g03002 331 PRINTS DnaJ domain signature 6 24 IPR001623 -
Car05g03002 331 PRINTS DnaJ domain signature 24 39 IPR001623 -
Car05g03002 331 PRINTS DnaJ domain signature 42 62 IPR001623 -
Car05g03002 331 PRINTS DnaJ domain signature 62 81 IPR001623 -
Car05g03002 331 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 331 - -
Car05g03002 331 CDD DnaJ 4 59 IPR001623 -
Car05g03002 331 Gene3D - 234 330 - -
Car05g03002 331 SMART dnaj_3 3 62 IPR001623 -
Car05g03002 331 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 331 - -
Car05g03002 331 SUPERFAMILY HSP40/DnaJ peptide-binding domain 155 236 IPR008971 GO:0006457|GO:0051082
Car05g03002 331 MobiDBLite consensus disorder prediction 108 130 - -
Car05g03002 331 Pfam DnaJ domain 4 67 IPR001623 -
Car05g03002 331 SUPERFAMILY HSP40/DnaJ peptide-binding domain 238 323 IPR008971 GO:0006457|GO:0051082
Car05g03002 331 Gene3D - 155 233 - -
Car05g03002 331 Pfam DnaJ C terminal domain 156 314 IPR002939 -
Car05g03002 331 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Car05g03002 331 SUPERFAMILY Chaperone J-domain 3 107 IPR036869 -
Car05g03002 331 MobiDBLite consensus disorder prediction 70 89 - -
Car05g03002 331 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Car05g03002 331 Gene3D DnaJ domain 3 111 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03002 Car-Chr5 74882475 74884932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03002 5 74 C2H2 Transcription Factor Family AT1G74250 37.838 4.78e-09 55.8