Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03000 ATGGAGGGTGCTGTTTCACCTCAATCTGAACAAGGATTGTTAATGGCACAACAACCCAATCACCATGTAATTGATATAACTGAAACTTCTCATGAAACTGAAACCTCACCAATTCGCCAAACAAGTGTTACTGAGGTAGATTTTCGTGTAGCTAGGTTGCGTGTTTCATCGAATGGGTCCAATTCTAGAATGATACGAGGGGATTCACGAGGGGAAGGAGGAAGTCGTAGGACTCCATTGAATTCGGGGTTATGGATTTCTTTGGAGTTGTTTTTCACAGTAATTCAGATTGTTGCTTCTTTACTTGTTCTTTTTTTGTCCAAAAATGAACATCCTCATGCTCCATTGTTTGCTTGGATTGTTGGTTATGCTTCTGGGTGTGTTGTTTCACTCCCTTTGTTATTTTGGCGATATTATGCTCGACGTGACCAATCTCCCACTATTGATGATCCTTCGGGGACACTTCTTTCAAATTCATCCACAATTCAAGGTGAAGAAGATGTTCCTGTTGCATCCTCTGGTAGCAATCGAGCTTCATGGTTGATGAATCCGAGACTGAAGATACTTATGGAATACTTCAAAATCGCCGTAGATTGCTTTTTTGCAATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCTTCAGCTAATGAAGCTCCTAACATGTACCGGTTATGTGTAGTGTTTCTTACTTTTAGCTGTGTCGGTTATGCAATGCCCTTCATTCTATGTGTAACAATCTGCTGCTGTCTTCCTTGTATAATTTCCACTCTTGGGGTCACAGAGGATCTGACACAAACCCGAGGTGCAACCACAGAATCTATTAATGCTTTACCGACTCACAAGTTCAAATTGAATAGAAACAAAAGCAGAGATGAAAGCACTCCAGATGTTTTTGAAGGTGGAGTTGTCGCCGGAGGAACTGAAAAGGAACGCATGATCTCTGGAGAAGATGCTGTTTGCTGCATATGCATAGCAAACTACGAAAATAACGACGATTTGAGAGAATTGCCATGTTCTCATCTTTTCCACAAAGAATGTGTAGACACGTGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGAAGTTGGTAATGTTACAGATGAACCTGCCATTGGGGAAAATACCAGCCAACAAAGGGGTGATGAGAATGGTCTTGCCAATACTTCATTGTAA 1191 0.4089 MEGAVSPQSEQGLLMAQQPNHHVIDITETSHETETSPIRQTSVTEVDFRVARLRVSSNGSNSRMIRGDSRGEGGSRRTPLNSGLWISLELFFTVIQIVASLLVLFLSKNEHPHAPLFAWIVGYASGCVVSLPLLFWRYYARRDQSPTIDDPSGTLLSNSSTIQGEEDVPVASSGSNRASWLMNPRLKILMEYFKIAVDCFFAIWFVVGNVWIFGGHSSANEAPNMYRLCVVFLTFSCVGYAMPFILCVTICCCLPCIISTLGVTEDLTQTRGATTESINALPTHKFKLNRNKSRDESTPDVFEGGVVAGGTEKERMISGEDAVCCICIANYENNDDLRELPCSHLFHKECVDTWLKINALCPLCKSEVGNVTDEPAIGENTSQQRGDENGLANTSL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03000 396 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Car05g03000 396 SUPERFAMILY RING/U-box 316 375 - -
Car05g03000 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 373 IPR013083 -
Car05g03000 396 Pfam Ring finger domain 324 365 IPR001841 -
Car05g03000 396 MobiDBLite consensus disorder prediction 375 396 - -
Car05g03000 396 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 24 390 - -
Car05g03000 396 MobiDBLite consensus disorder prediction 372 396 - -
Car05g03000 396 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 24 390 - -
Car05g03000 396 SMART ring_2 324 364 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03000 Car-Chr5 74867433 74871839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03000 66 369 C3H Transcription Factor Family AT1G80400 54.717 1.04e-123 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03000 - - gmx:100775815 504.597