Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02991 ATGTCTCAGACCAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTACCTAGTCAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAATCTGAGGGAAAAGTATCCTCGGACCCTGTTGCCATTGATGCCCCCGGAGGTTTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGACATTTTTATTGCCAGGACCAATGAGAAGCACTCTGAGGTTGCTGCATCGTATATAGAGACTCAACTACTTAAGGCAAGGGAAcaacagcagcagcagcaacagcctcaatcccagcagtcacagcatcaacaacaacagcagcaaatgcagatgcaacaactcctgatgcagaggcatgcacagcagcaacaacagcaacagcaacaacagcagcaccagcaacaacaacagcaccagcaacagcaacagcaacagcaacagtcacaatcgcagcagcagccgcagcaaccacaacaacagcaAAGTAGGGATAGGGCTCATCTCTTAAATGGTAGTGCAAATGGGTTAGTTGGAAACCCTGGAACTGCAAACGCAATAGCAACAAAGATGTACGAGGAAAGGTTAAAAGTTCCCCTTCAGAGGGATTCGTTGGATGATGCGGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAATCATCACGCCTCAATATTGAAGTCAGCTGCAGCTACTGGTCAGCCTACGGGGCAAGTTTTGCCTGGAGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCCCGTAGTCAGCAAATACCAGGGTCTACACCGGATATGAAGAACGACATGAATCCTGTTTTAAATCCCAGAGCTGCGGGTCCCGATGGATCATTGTTGGCAATTTCCGGATCGAATCAAGGGAGCAACAATTTGACTTTGAAAGGGTGGCCACTCACGGGTTTGGATCAACTTCGCTCTGGTCTACTCCAGCAGCAAAAGCCTTTCATGCAGGCTCCTCAGCCTTTTCATCAACTACAAATGTTGACACCACAACATCAGCAACAGCTTATGCTTGCACAACAGAATCTGGCATCACCATCCGCCAATGAAGAAAGTAGAAGACTGAGAATGCTATTGAATAATAGGAATATTGGTCTAAATAAGGATGGTCTTTCGAACTCTGGGGGTGATGTTGGATTACCTCTTCAAGGTGTTGGCCCTCCTTTTCCTCGTGGAGATACAGATATATTAATGAAGTTGAAATTGGCTCAGTTgcagcagcagcaacatcaacaacagtctaacatgaatgcacagcagcagcaacttcaacagcaTGCTCTTTCAAATCAGCAATCTCAGAGTTCAAATCATAGCATACACCAGCAAGATAAAGTAGGGGCAGGAAATGATAGCATGTCAAACTCATATAGAGGAAATGATCAGGTCTCAAAAAACCAGATTGGAAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAACAGTTCAGGAACAGCAAATACGACAGGCCCATCACCAAGTTCTGCACCCTCGACTCCCTCAACTCATACTCCTGGAGATGCTATGTCAATGCCTGCCTTGCCTCATAGTGGCAGTTCATCAAAGCCTTTAATGATGTTTGGTACTGATGGCACTGGAACTCTTACATCATCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTCGAGGAAAATGTAGAGTCTTTTTTATCCCAAGATGATACAGACCCTAGAGATCCTGTTGGCCGTTGTATGGATGTAAGCAAAGGGTTCACATTTTCTGATGTAAACTCTGTACGTGCAAGTACAAGCAAAGTTGCCTGTTGCCATTTCTCGTCTGATGGAAAATTACTTGCAAGTGGCGGTCATGACAAAAAGGCTGTTATATGGTACACTGATTCTCTAAAGCAAAAAGCTACTCTTGAAGAGCATTCTTCTTTGATAACTGATGTCCGATTCAGTCCAAGCATGCCGCGTCTAGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGAGAATCCTGGATATTCACTCCGCACCTTTACGGGACATTCTACATCCGTTATGTCGCTAGATTTTCATCCAAATAAAGATGATCTTATCTGCTCTTGTGATGGTGATGGTGAGATACGATATTGGAGCATAAACAATGGCAGTTGTACTAGAGTCTCCAAGGGTGGCACTACCCAAATGAGATTTCAACCTCGCCTAGGGAGGTACCTTGCTGCAGCTGCTGAGAACATTGTGTCTATACTTGACGTGGAGACACAGGCATGCCGGTATTCATTAAAGGGTCACACAAAGACAATAGATTCTGTATGTTGGGATCCATCTGGAGAATTGTTGGCATCTGTGAGTGAGGACTCTGTAAGAATTTGGACTCTTGGAACAGGAAGTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGCAGCAAGTTTCACTCATGTGTTTTCCATCCAACATATCCTTCATTGTTGGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGGCTGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTGATTACTGCCTTGTCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCTAGTCATGACAAGTTCATCAAGCTATGGAAGTAA 2694 0.3957 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQSEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKAREQQQQQQQPQSQQSQHQQQQQQMQMQQLLMQRHAQQQQQQQQQQQHQQQQQHQQQQQQQQQSQSQQQPQQPQQQQSRDRAHLLNGSANGLVGNPGTANAIATKMYEERLKVPLQRDSLDDAAMKQRFGENMGQLLDPNHHASILKSAAATGQPTGQVLPGAAGGMSPQVQARSQQIPGSTPDMKNDMNPVLNPRAAGPDGSLLAISGSNQGSNNLTLKGWPLTGLDQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQNLASPSANEESRRLRMLLNNRNIGLNKDGLSNSGGDVGLPLQGVGPPFPRGDTDILMKLKLAQLQQQQHQQQSNMNAQQQQLQQHALSNQQSQSSNHSIHQQDKVGAGNDSMSNSYRGNDQVSKNQIGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDAMSMPALPHSGSSSKPLMMFGTDGTGTLTSSSNQLWDDKDLELQADVDRFVEDGSLEENVESFLSQDDTDPRDPVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVENPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTLGTGSEGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSLELWNMAENKTMTLSAHDGLITALSVSTVNGLVASASHDKFIKLWK 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02991 897 Gene3D - 746 897 IPR015943 GO:0005515
Car05g02991 897 MobiDBLite consensus disorder prediction 419 539 - -
Car05g02991 897 MobiDBLite consensus disorder prediction 419 519 - -
Car05g02991 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 865 897 IPR001680 GO:0005515
Car05g02991 897 Pfam LisH 10 36 IPR006594 GO:0005515
Car05g02991 897 Coils Coil 112 145 - -
Car05g02991 897 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Car05g02991 897 SMART Lish 8 40 IPR006594 GO:0005515
Car05g02991 897 MobiDBLite consensus disorder prediction 140 165 - -
Car05g02991 897 SUPERFAMILY WD40 repeat-like 611 897 IPR036322 GO:0005515
Car05g02991 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 690 IPR001680 GO:0005515
Car05g02991 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 698 736 - -
Car05g02991 897 Pfam WD domain, G-beta repeat 776 810 IPR001680 GO:0005515
Car05g02991 897 Pfam WD domain, G-beta repeat 694 731 IPR001680 GO:0005515
Car05g02991 897 Pfam WD domain, G-beta repeat 860 897 IPR001680 GO:0005515
Car05g02991 897 Pfam WD domain, G-beta repeat 652 687 IPR001680 GO:0005515
Car05g02991 897 Pfam WD domain, G-beta repeat 615 644 IPR001680 GO:0005515
Car05g02991 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 698 740 IPR001680 GO:0005515
Car05g02991 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 780 820 IPR001680 GO:0005515
Car05g02991 897 SMART WD40_4 773 811 IPR001680 GO:0005515
Car05g02991 897 SMART WD40_4 648 687 IPR001680 GO:0005515
Car05g02991 897 SMART WD40_4 858 897 IPR001680 GO:0005515
Car05g02991 897 SMART WD40_4 817 856 IPR001680 GO:0005515
Car05g02991 897 SMART WD40_4 606 645 IPR001680 GO:0005515
Car05g02991 897 SMART WD40_4 691 731 IPR001680 GO:0005515
Car05g02991 897 MobiDBLite consensus disorder prediction 89 113 - -
Car05g02991 897 CDD WD40 613 897 - -
Car05g02991 897 Gene3D - 592 745 IPR015943 GO:0005515
Car05g02991 897 Coils Coil 413 433 - -
Car05g02991 897 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 897 IPR044716 GO:0003714
Car05g02991 897 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 897 - -
Car05g02991 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 865 897 - -
Car05g02991 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 613 654 IPR001680 GO:0005515
Car05g02991 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 690 - -
Car05g02991 897 ProSitePatterns Trp-Asp (WD) repeats signature. 674 688 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02991 Car-Chr5 74805656 74813401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02991 692 896 Miscellaneous Gene Families AT5G08390 24.286 8.72e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Car05g02991 WD40 0.0046 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02991 - - gmx:100816263 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03155 04 59768651 59777616 Car05g02991 05 74805656 74813401 PCT