Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02988 atGGAAAGTAGTGAACTAAGAGTAGGAAGTGGACGCATAGGGAGCTCAAGCATATGGAGAAGTGGTGCAGTTGATGTGTTTTCAGGTTCTTCAAGAAGGGAAGATGATGAACAAGAGCTTCAATGGGCTGCTATTGAGAAGCTTCCAACCTATCTACGCTTGACTAGGGGAATACTCACTGAATCACAAGATCAACAACCTATACAGATTGATATCAACAAACTTGGACCACTTCAAAGGAAGAATTTAGTGGAGAGACTAGTTAAGATTGCTGAGGAAGATAATGAGAAGTTCTTGTTGAAGTTAAGAAAACGCATTGATCGGGTTGGACTTGATATTCCGACAATTGAAGTTCGTTTTGAGCACTTGAATGTCGAAGCAGAAGCTCATGTAGGAAGCAGAGCATTGCCAACAATCTTAAATTTCTCCATTAACTTGTTTGAGGGGTTACTTAATTATCTTCACCTTATTCCCAGTAGAAAGAAGCCTTTCACAGTTCTTCATGATGTTAGTGGAATCATCAAGCCTAAAAGaatgacactactcttaggtcctccaagttctggaaagactacattgttgttggcactggctggaagactcaataaagatctaaaattttcggggcgagttgtgtataatggtcatgagatggaagaatttgtacctcagagaacatcagcttacataagtcaaactgatttgcacataggagaaatgacagtgagagaaacattggctttttcagcaaggtgtcaagggataggaactcgttatgatatgctggccgaactatcaagaagagagaaggctgaaaacattaagccagatcctgatcttgatatttatatgaaAgctgcagcactagaaggccaagaaaccaatgtagttacagattatataattaagattttgggactagatgcttgtgctgataccatggtaggggatgacatgatccgaggtatttctggtggacagaaaaagagagtcacaactggtgagatgctagttggaccggaaagagcacttttcatggacgaaatatcgaccggtttagacagttccaccacatttcaaatgattaattcactaagacaatccatccacattctgaatggaacagctctcatctctcttctccagccagcacctgaaacttacgagttattcgacgacataattctcctctcagatggacaaattgtgtatcaaggtccaagggaaaatgtcctcgagttctttgaacacattggtttcaaatgtccagagagaaagggagtagcagactttttacaagaagtaacatcaagaaaagatcaagaacaatattgggcaaataaagatgaatcatataccttcatcactgtcagagaatttgctgaagcatttcaatcatttcacattgctcgaaaactcggcgacgaacttgctaccccatttgatacctccaaaggccaccctgctgttttaaccaaaaacaagtatggtgtgagcaagaaagagctcttaaaagcatgtgtatccagagaattcttacttatgaaaaggaattcgttcgtctacattttcaagatgtggcaattaattttcaccggcatcgtaacaatgacattgttcctacgaactgagatgcaccggaacacagaaacagacggtggaatatatatgggagctttattcttcatactaattgtaattatgttcaatggatattctgagttatccatgttcattatgaaacttccagtgttctataagcagagggaccttctttttttccctgcttgggcatactctttgcctacatggatccttaagattcctataacctttctagaagttggtatttgggttgtgttcacttactatgttattggatttgatccaagttttgaaaggttcatcaaacagtactttttgctagtttgtatcaaccagatggcatctgcactttttcgatttattggggcagttggaaggaacattatagttgcaaacacagctggatcatttgctttaattgtagttttggtaatgggtggatttatcctatctagagttgatgtgaagaagtggtggttatggggttactgggtctccccaatgatgtatggacagaatgctattgctgtgaatgaattccttggaaatagttggTCCCATGTTCCGCCTGATTCAACAGAACCGCTAGGAGTGCAAATCTTGAAGTCACGTGGGATTTTCCCCGAAGCATATTGGTATTGGATTGGAGTTGGAGCTTCCATTGCATACATGTTACTATTCAACTTCCTTTTCCCTTTGGCCTTACATTATCTTGACTCATATGATAAACCACAGGCTTTAATATCAGAAGAAGCTTTGGCTGAGAGAAATGCTGCCACTGCTGGAAACAGACAGATAATTGAATTGTCGCCTGAATACGAATGTTCTTCAGCCAAAGGAAATAGAAGTCGAAAAAGTTTTCCTTCAACGACGGCGTCTGCAAGAGTGGGCAGCATTAGTGCAGCTGATCACAGTAGAAAGCATGGGATGGTTCTTCCTTTCACACCCCTCTCTATCACTTTTGATGAAATCAGATATGAGGTGGACATGCCACAGgaaatgaaggccaaaggtgttcttgaagatcgacttgaacttttgaccagtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgttatctggaagaaaaacaacaggatatattcaaggacgaatcactatatccggataccctaaaaagcaagaaacatttgctcgcatatcaggatactgtgaacaaaccgatatccactctccccatgttactgtctatgaatctatggtttattctgcatggctcaggttaccccctgaggttgattctgccacaagaaagatgttcattgaggaagttatggagctgatagagctgacttcaataagagaagccctggttggattgcctggtgtgaatggtttgtccacagagcagcgcaagaggttaacaattgcagttgaacttgttgccaatccatctattatattcatggatgaacctacctctggcctcgatgccagagctgctgctatagtaatgagaacagtaaggaatacagtggacacagggcgaaccgttgtctgcacaattcaccagcctagtattgatatatttgatgcttttgatgagctacttctcttgaagcgtggaggagaggaaatatatgtggggccattaggccagcattgctctaatctgatcaattacttcgagggaattaatggagtgccaaaaatcaagaatagttataaccctgcaacttggatgttagaggttacttcagaagcacaagaagaagctataggagttaacttcgctgatctatacaagaattctgacttatataggagaaacaaggccttgatcaaggaactaagtacccctccagagggctctaaagacttgtttttcacaacacagcactcacagtcttttttaacccaatgtatggcttgcctttggaagcaacacctatcatactggcgaaatccaccgtacagtgcAGTGAGACTTTTATTCACAACAGTCATAGCCTTCTTGTTCGGGACAATATTTTGGAACATTGGCTCCAAAAGGGAaagaagacaagatctattcaatgcaatgggatccatgtacgccgcagtcctcttcatcggggtacaaaatgctacgtcggttcaaccagttgtagccatcgagagaacagtcttctacagagaaagagctgctggaatgtactcggcgttgccatatgcatttggacaggttgctgttgagatcccatacatactcatacaatcccttgtatatggggttatagtgtataccatgattgggtttgaaatgacacctgccaagttcttttggtatctcttcttcatgttcttcaccttgctatacttcaccttttttggaatgatgcttgtgggtgctacccctaatcacaatgttgccgctatagtttcctttggcttctacttgttatggaaccttttctcaggattcgttattcccCGAACCagaatgccaatatggtggagatggtttttctggatttgtcctatctcttggactctatatggcttggttaccacacaatttggtaatgttaaagaacgtatggagactggagagaccgtggaagaatttgttatgacttattttgggtatagagatgatttcaaaggtgtagctgcagctgtggttgttagtttttcacttatctttggatttacatttgccttttcaattaaggcatttaatttccaaaaaagatga 4356 0.1006 MESSELRVGSGRIGSSSIWRSGAVDVFSGSSRREDDEQELQWAAIEKLPTYLRLTRGILTESQDQQPIQIDINKLGPLQRKNLVERLVKIAEEDNEKFLLKLRKRIDRVGLDIPTIEVRFEHLNVEAEAHVGSRALPTILNFSINLFEGLLNYLHLIPSRKKPFTVLHDVSGIIKPKRMTLLLGPPSSGKTTLLLALAGRLNKDLKFSGRVVYNGHEMEEFVPQRTSAYISQTDLHIGEMTVRETLAFSARCQGIGTRYDMLAELSRREKAENIKPDPDLDIYMKAAALEGQETNVVTDYIIKILGLDACADTMVGDDMIRGISGGQKKRVTTGEMLVGPERALFMDEISTGLDSSTTFQMINSLRQSIHILNGTALISLLQPAPETYELFDDIILLSDGQIVYQGPRENVLEFFEHIGFKCPERKGVADFLQEVTSRKDQEQYWANKDESYTFITVREFAEAFQSFHIARKLGDELATPFDTSKGHPAVLTKNKYGVSKKELLKACVSREFLLMKRNSFVYIFKMWQLIFTGIVTMTLFLRTEMHRNTETDGGIYMGALFFILIVIMFNGYSELSMFIMKLPVFYKQRDLLFFPAWAYSLPTWILKIPITFLEVGIWVVFTYYVIGFDPSFERFIKQYFLLVCINQMASALFRFIGAVGRNIIVANTAGSFALIVVLVMGGFILSRVDVKKWWLWGYWVSPMMYGQNAIAVNEFLGNSWSHVPPDSTEPLGVQILKSRGIFPEAYWYWIGVGASIAYMLLFNFLFPLALHYLDSYDKPQALISEEALAERNAATAGNRQIIELSPEYECSSAKGNRSRKSFPSTTASARVGSISAADHSRKHGMVLPFTPLSITFDEIRYEVDMPQEMKAKGVLEDRLELLTSVNGAFRPGVLTALMGISGAGKTTLMDVLSGRKTTGYIQGRITISGYPKKQETFARISGYCEQTDIHSPHVTVYESMVYSAWLRLPPEVDSATRKMFIEEVMELIELTSIREALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPLGQHCSNLINYFEGINGVPKIKNSYNPATWMLEVTSEAQEEAIGVNFADLYKNSDLYRRNKALIKELSTPPEGSKDLFFTTQHSQSFLTQCMACLWKQHLSYWRNPPYSAVRLLFTTVIAFLFGTIFWNIGSKRERRQDLFNAMGSMYAAVLFIGVQNATSVQPVVAIERTVFYRERAAGMYSALPYAFGQVAVEIPYILIQSLVYGVIVYTMIGFEMTPAKFFWYLFFMFFTLLYFTFFGMMLVGATPNHNVAAIVSFGFYLLWNLFSGFVIPRTRMPIWWRWFFWICPISWTLYGLVTTQFGNVKERMETGETVEEFVMTYFGYRDDFKGVAAAVVVSFSLIFGFTFAFSIKAFNFQKR 1451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02988 1451 Gene3D - 870 1100 IPR027417 -
Car05g02988 1451 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 863 1107 IPR003439 GO:0005524
Car05g02988 1451 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 1451 - -
Car05g02988 1451 Pfam ABC transporter 167 349 IPR003439 GO:0005524
Car05g02988 1451 Pfam ABC transporter 883 1034 IPR003439 GO:0005524
Car05g02988 1451 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 10 1451 - -
Car05g02988 1451 Gene3D - 154 465 IPR027417 -
Car05g02988 1451 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Car05g02988 1451 Pfam ABC-2 type transporter 1179 1393 IPR013525 GO:0016020|GO:0140359
Car05g02988 1451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 878 1096 IPR027417 -
Car05g02988 1451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 424 IPR027417 -
Car05g02988 1451 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Car05g02988 1451 SMART AAA_5 891 1083 IPR003593 -
Car05g02988 1451 SMART AAA_5 176 408 IPR003593 -
Car05g02988 1451 Pfam ABC-2 type transporter 382 433 IPR043926 GO:0140359
Car05g02988 1451 CDD ABCG_PDR_domain2 851 1089 IPR034003 -
Car05g02988 1451 Pfam ABC-transporter N-terminal 86 142 IPR029481 -
Car05g02988 1451 Pfam Plant PDR ABC transporter associated 720 783 IPR013581 -
Car05g02988 1451 CDD ABCG_PDR_domain1 156 406 IPR034001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02988 Car-Chr5 74783072 74790784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02988 890 1105 Calmodulin-binding Proteins AT2G36910 27.027 3.70e-06 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03158 04 59842117 59855200 Car05g02988 05 74783072 74790784 PCT
Car05g02988 05 74783072 74790784 Car04g03157 04 59825330 59834988 PCT