Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02960 ATGGTACAAACAAGGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTACTAAAAAGGAGGGTGTGGTTAGGAACATTTGAGACAGCAGAGGCTGCAGCAAGAGCATATGATCAAGCAGCTATTTTGATGAATGGTCAAAGTGCAAAGACTAATTTCCCTGTGTCAAAGAATCAAGGTGGTGAAGTTGCTATTGACACCACCCCTTGTGTTGGTGGTGATAAGTCTTTCTTGTCTCCCAAGGCACTGTCAGAACTACTCAGCACAAAGCTAAGAAAGTATTGTAAAGACCCTTCTCCATCACTCACTTGTTTGAGGCTAGATGCTGATAATTCTCACATTGGTGTGTGGCAAAAAGGAGCTGGACCACATTCTGGCTCTAATTGGGTCATGAGAGTTGAGCTTGGTGGGAAGAAACAGATTATAGAGTCAGAGATAGAGTCACCACAACCACACATTATTGATGATGTTGTTAATAAGGATGCTAATAATGCTGATATTGAAAATGGTGTAGTAGTTGAAGAAGAGGAAAGAGTTGCTTTGCAGATGATTGAAGAGCTACTTAATTGGAACTATCCATGTGATTCAACTTCAAGTAATTCTCAACAGGAAGAAGATATTAACATTACATTTCCATGTCATGGTTCTTAA 678 0.413 MVQTRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQSAKTNFPVSKNQGGEVAIDTTPCVGGDKSFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGGKKQIIESEIESPQPHIIDDVVNKDANNADIENGVVVEEEERVALQMIEELLNWNYPCDSTSSNSQQEEDINITFPCHGS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02960 225 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Car05g02960 225 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Car05g02960 225 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Car05g02960 225 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Car05g02960 225 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Car05g02960 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 206 - -
Car05g02960 225 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Car05g02960 225 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Car05g02960 225 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 206 - -
Car05g02960 225 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Car05g02960 225 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02960 Car-Chr5 74546722 74547773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02960 1 202 AP2-EREBP Transcription Factor Family AT5G25390 59.113 3.63e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car05g02960 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02960 - - lang:109326202 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02960 05 74546722 74547773 Car05g02960 05 74546722 74547773 ECH
Car07g00759 07 6754677 6755699 Car05g02960 05 74546722 74547773 ECH