Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02949 ATGGAGCTTCAATTAAGCCTTTCTCTCCCCATTCATTCCATTGAGGGATTTGATCCTTACGATCATGGTTTAATTAATCACAGTGGTTGTTCTGAAAAAAAGAAACATGTCAAAAACAAACGTAGCTTCGAAGAATCCTTTGGATATTATTTGAAACCTTTGTCTTTATTAGTATGGAGTGGACAGCCAAATGAGGAAGATAACCACCGCAATGAAAAAATGAACACAAACATTCACACATCAAACAATGAAGGAAAAGAATATTTGGTGGGGTGGCCACCAATAAAATCATGGAGGAAGAAAGAACTTCATCATCAGCAGCAGCATCATGGTCAAATCAGGATGCAAGGTATTGAAAATCAAAGTAGAGGATCAAAGCCTTTATATGTTAAGGTTAACATGGAAGGTGTTGTCATAGGAAGGCAAATCAATTTGAGACTCTACAATTCATATCAGACTCTCACAGATTCATTGATTAGCATGTTTGTTAAATGCCAAAATTTTGAAGAAGATGGATCAAATTATACACTCACCTTTCAAACTAAACAGGGGGACTGGATGCTTACTGGACATATACCATGGCAATCCTTCATTGGTACGGTGCGGCGTCTGGCCATATTAAGGAATACAAAATGA 636 0.3726 MELQLSLSLPIHSIEGFDPYDHGLINHSGCSEKKKHVKNKRSFEESFGYYLKPLSLLVWSGQPNEEDNHRNEKMNTNIHTSNNEGKEYLVGWPPIKSWRKKELHHQQQHHGQIRMQGIENQSRGSKPLYVKVNMEGVVIGRQINLRLYNSYQTLTDSLISMFVKCQNFEEDGSNYTLTFQTKQGDWMLTGHIPWQSFIGTVRRLAILRNTK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02949 211 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 210 IPR003311 GO:0005634|GO:0006355
Car05g02949 211 Pfam AUX/IAA family 171 209 IPR033389 -
Car05g02949 211 Pfam AUX/IAA family 34 164 IPR033389 -
Car05g02949 211 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 210 - -
Car05g02949 211 Gene3D - 122 211 - -
Car05g02949 211 ProSiteProfiles PB1 domain profile. 127 211 IPR000270 GO:0005515
Car05g02949 211 SUPERFAMILY CAD & PB1 domains 124 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02949 Car-Chr5 74460679 74463242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02949 130 206 B3 DNA Binding Superfamily AT3G61830 34.615 2.05e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Car05g02949 AUX_IAA 4.3e-38 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02949 K14484 - gmx:100802759 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02949 05 74460679 74463242 Car05g02949 05 74460679 74463242 ECH