Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02929 ATGTCATaccacaaccaccacccactccaccatttcactcactccgccacccaaccaacctccgatcctcaccacTCCTTCCAAACCGCACCTAATTGGCTCAACAACGCTCTTCTTCGCAACCTCGATTCCTCAAACACCAACGTTAACTCCACTAATTTCCTCAACCTCGACACCGCCGCTTCCCAATCCTCCAACCATTGGCTATCTCATCCAATCCTCCACCGCAACAACAGCGAAGTAATCGACGACATCGCCGGCGTGAAGGTGGCGGAAACCGGCGAGGCAGCGGCGGAGGGAGTGATGAAATGGCAGAACGCGAAATACAAAGGGGAGATTATGGCGCACCCGTTGTACGAACAGCTTCTATCAGCACACGTGGCGTGTTTGAGAATCGCCACGCCGGTTGATCAGTTGCCGAAGATCGATGATGAGCTGGCACAATCACAGAATGTTGTTGCCAAGTACTCTGCCTTTGGACAAGACTCTCAGGGACAGGGCATTCTTGATCACGATAACAAACAACAGCTTGATCACTTCATGTCGCACTATGTTTTGTTGCTATGTTCTTTCAAAGAACAGCTTCAGCAACATGTCCGTGTTCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAACAGTCCTTACAAAGTCTAACAGGAGTTTCACCAGGGGAAGGTACAGGTGCAACAATGTCTGAAGATGAAGATGAGCAAGTAGACAGTGATGTTAATCAATTTGATACTGGTGGTTTGGATGGTTCAGACAGCATGGGATTTGGTCCTCTTGTTCCAACTGAGAATGAGAGGTCCCTAATGGATCGTGTAAGACATGAATTAAAGCATGAATTGAAACAGGGTTATAAAGAGAAAATCGTGGACATAAGAGAGGAAATTTTGCGTAAGAGACGAGCTGGGAAACTTCCCGGTGACACTACCTCAGTCCTTAAAGCTTGGTGGCAATCACATTCAAAGTGGCCTTATCCTACAGAGGAGGATAAGGCAAGGTTGGTGCAAGAAACGGGTTTAGAATTGAAACAAATCAATAATTGGTTTATCAATCAAAGGAAAAGGAATTGGCACAGCAATCCTTCAACTTCTAATGTCTTGAAGAGCAAGCGCAAGAGGTGA 1134 0.433 MSYHNHHPLHHFTHSATQPTSDPHHSFQTAPNWLNNALLRNLDSSNTNVNSTNFLNLDTAASQSSNHWLSHPILHRNNSEVIDDIAGVKVAETGEAAAEGVMKWQNAKYKGEIMAHPLYEQLLSAHVACLRIATPVDQLPKIDDELAQSQNVVAKYSAFGQDSQGQGILDHDNKQQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDVNQFDTGGLDGSDSMGFGPLVPTENERSLMDRVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLELKQINNWFINQRKRNWHSNPSTSNVLKSKRKR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02929 377 ProSiteProfiles ELK domain profile. 280 300 IPR005539 GO:0003677
Car05g02929 377 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 19 377 - -
Car05g02929 377 Pfam KNOX1 domain 109 149 IPR005540 GO:0003677|GO:0005634
Car05g02929 377 Gene3D - 299 373 - -
Car05g02929 377 ProSiteProfiles 'Homeobox' domain profile. 300 363 IPR001356 GO:0003677
Car05g02929 377 MobiDBLite consensus disorder prediction 221 241 - -
Car05g02929 377 SMART KNOX2_2 167 222 IPR005541 GO:0003677|GO:0005634
Car05g02929 377 Pfam KNOX2 domain 173 221 IPR005541 GO:0003677|GO:0005634
Car05g02929 377 CDD homeodomain 303 364 IPR001356 GO:0003677
Car05g02929 377 SUPERFAMILY Homeodomain-like 302 366 IPR009057 -
Car05g02929 377 SMART KNOX1_2 107 151 IPR005540 GO:0003677|GO:0005634
Car05g02929 377 SMART HOX_1 302 367 IPR001356 GO:0003677
Car05g02929 377 MobiDBLite consensus disorder prediction 12 29 - -
Car05g02929 377 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 19 377 - -
Car05g02929 377 Pfam Homeobox KN domain 320 359 IPR008422 GO:0003677|GO:0006355
Car05g02929 377 SMART ELK_2 280 301 IPR005539 GO:0003677
Car05g02929 377 Pfam ELK domain 280 301 IPR005539 GO:0003677
Car05g02929 377 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02929 Car-Chr5 74298632 74302288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02929 27 377 Homeobox Transcription Factor Family AT5G25220 68.608 8.56e-180 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Car05g02929 KNOX2 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02929 - - gmx:100790048 555.829