Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02926 ATGGCCAGACCACAACAACGATATCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGTCACCCCATTTTAAAAACTAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCAAGAGCATACGATGAAGCAGCGAGACTAATGTGTGGAACAAGAGCGAGAACAAATTTCCCTTACAACCCAAATGCTTCTCAATCATCATCTTCAAAACTTCTATCAGCAAATTTAACTGCTAAACTTCATAGATGTTACATGGCTTCATTGCAAATGACTAGGCCATCTTTTCAAGAATCTCAGAGAGAATCTTCACAAAGTAACATCATTTCTACAAGCAATGTTTCTATGAAAAGTAGTGAAGAAATTGATCATACTACTACTATGTTGCCACAGAAGAGACATGAATTAGAGAAACAAGAATCAGAGGGAAATTGGGTTTTCAAGAAAGTTAAAGTTGAAAATTCTCAGCAGTTTTATAAGCCACTTGAAGAAGATCACATTGAACAAATGATAGAGGAATTGCTTCATTATGGGTCTATTGAGCTTTGTTCTGTTATTCCACCATAG 582 0.3832 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSANLTAKLHRCYMASLQMTRPSFQESQRESSQSNIISTSNVSMKSSEEIDHTTTMLPQKRHELEKQESEGNWVFKKVKVENSQQFYKPLEEDHIEQMIEELLHYGSIELCSVIPP 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02926 193 MobiDBLite consensus disorder prediction 131 145 - -
Car05g02926 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 189 - -
Car05g02926 193 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Car05g02926 193 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Car05g02926 193 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Car05g02926 193 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Car05g02926 193 MobiDBLite consensus disorder prediction 100 130 - -
Car05g02926 193 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Car05g02926 193 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Car05g02926 193 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Car05g02926 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 189 - -
Car05g02926 193 MobiDBLite consensus disorder prediction 100 145 - -
Car05g02926 193 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02926 Car-Chr5 74240333 74241373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02926 1 192 AP2-EREBP Transcription Factor Family AT5G25190 65.625 7.12e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car05g02926 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02926 - - gmx:100804510 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02926 05 74240333 74241373 Car05g02926 05 74240333 74241373 ECH
Car04g03212 04 60488529 60489225 Car05g02926 05 74240333 74241373 PCT