Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02922 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAAGCCAATTTATAATATTGACGAATCAGATGATGATGACTTTTTGCTTAACAAACCTGGGACAAGTCAGGAAAAGTTTGAGAGGGTAGTCAGAAGTGATGCGAAAGAGGATTTATGTCAAGCCTGTGGAGAAAGTGGAGATCTCCTGAGCTGTGAAACTTGCACATATGCTTATCATTCTAGGTGTTTACTTCCACCACTTAAAGGCCCTGCTCCCGACAACTGGAGGTGCCCTGAATGTGTTAGCCCACTTACTGATATTGATAAGTTATTAGACTGTGAGATGCGCCCTACTGTAGATGCGGATGGTGACGACACAAAGTTGGGGTCAAAGCAAATTTTTGTTAAACAATACCTTGTTAAGTGGAAGGGACTATCATATCTGCACTGCACATGGGTTCCAGAGAAAGAGTTTCTGAAAGCTTTTAAGAATCATCCTCGTCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGATTCCTCCAATACTTCTGATGAAGACTTTGTTGCCATTCGCCCTGAATGGACTACAGTTGATCGAGTACTTGCTTGCAGGGGTGATAATGATGAGAAGGAATATCTGGTGAAGTGGAAAGAGCTTTCATACGATGAATGTTATTGGGAATATGAGTCTGATATTTCTGCATTTCAACCGGAAATAGAAAGATTCAATAGATTTCGTTCTCGGTCAAGCAAACTTGCTTACATCAAGCAAAAAAGCCGTGATAATGATGATGCAGAATCGAAGAAACAACAGAAAGAATTTCAACAGTATGAACATAGTCCCAAGTTTCTTTCAGGAGGAGGTTCTTTACACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAACAAACACATGTCATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAGAGTATTGCTTTCTTAGCATCCCTTTTTGAAGAAGGTGTCTCTCCACATCTGGTGGTTGCTCCACTTTCAACGCTGCGAAACTGGGAGCGTGAATTTGCAACATGGGCCCCTCAAATGAATGTTATTATGTATGTTGGATCTTCCCAAGCTCGTAATGTTATCAGAGAACACGAATTTTACTTTCCCAAGAAACTGAAGAAGATCAAGAAAAAGAAATCTGGTCAGATAGTTAGTGAAAGTAAGCAAGACAGGATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACTTTGACACAGCATCGTTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGCCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTTCTCTTGACTGGAACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAAGAAGAATTCAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGCTGGCCCCGCATCTTCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTTTACGAGTTGATTTGAGCAGCAAACAAAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATGCTTACATGTTAGAAGGCGTTGAGCCAGATATTGACGATCCAAAAGAAGCATTCAAACAACTGGTGGAATCATCGGGGAAGTTGCAATTGCTGGACAAGATGATGGTAAAGCTTAAAGAGCAAGGACATAGAGTTCTTATATACTCCCAATTTCAGCACATGCTTGATTTGCTTGAAGATTACTGCTCTTACAAGAAATGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAATACGTATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTCCTTCTCTCTACAAGAGCTGGGGGTTTGGGGATAAACCTTGCTACTGCTGACACAGTTGTCATATATGACAGTGATTGGAATCCTCATGCTGATTTACAAGCAATGGCTAGAGCTCATCGACTTGGCCAAACTAATAAGGTGTTGATTTATAGGCTTATAACGCGAGGAACGATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACACCTTGTTGTCGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGGTATGGCTCAAAGGAGTTATTTGCAGACGAGGACGATGAAGCTGGAAAATCCCGTCAAATCCATTATGATGCAGCTGCTATCGATAGGTTGCTGGATCGTGACCAAGTTGGACATGAAGAGGCTACTTTGGATGATGAAGAGGAAGATGGATTTCTGAAGGCTTTTAAGGTTGCAAATTTCGAGTATGTTGATGAAGCTGAGGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAAACTATGAACAGTTCAGAAAGAACACATTACTGGGAAGAGTTGTTAAAAGACAAGTTTCAAGAGCATAAAGTTGAAGAGTTCAATGCTTTGGGCAAAGGAAAGCGAAACCGCAAGCTGATGGTTTCTGTTGAGGAGGACGACCTTGCTGGTCTGGAAGATGTAAGCTCTGACGAGGATGACAATTATGAAGCAGAGCTTACTGATGGTGATTCAAATTCCAATGGAACTACTTCTGGTCGAAGGCCTTATAGAAAAAAAGCACGGGCAGCAGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTACTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTACGGGGTTGGTGATTTTGATTGGAAGGAATTTACTTCCCGCATGAAGCAGAAGACTTATGAAGAAATCAAAGATTATGGGACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCTCTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAACATCCTCAAACTCCACTGTTTTCAGATGACATCTTATTACGTTATCCAGGTCTGAAGGGTATAAGGAAGTGGAGGGAGGAGCATGATTTACTTCTGCTGCGTGCTGTGTTAAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCTGTTATAAATTTACCGCTACCAGGACAAATGGGCTCTCAGGTGCAAAATGGTGCAAATTTGACAAATGCAGAAGTACCCAGCAATGAATCCAGGGAAAATGGTGGAAGTGACATAGCAGCTGATGGTGCCCAAGGTTCAGGTGATGCTAGGAACCAAACACAGCTATATCCAGACTCGTCCATGTTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGGTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCAAATGAAGTAACCAACGATGAACTTAAAACTGTACCCAATGCTACTACTAATCCAAGTTATAAATCAGGGGATACTGATACCCAAATGATTGATCAACTGCCACAAGTAGAAACAATAGCTCCAGAAGATGCTTCGGTTGCTTGTGATAGTGATCCAAATCGATTGAAATTAGTTGAACTTTACAATGAGATGTGCAAGGTAGTTGAGGAAAACCCCACGTTGGCAAGAGAACCGGAAGAGGTCAATGCAGTGAAGAAGTTACCGTCCTTCGAAATCATTTGTCAAGATATCAACAGAATTCTAACACCCACAGTAGAGCACGGTGAAGTTTTGGGGTCCAAATCGCTGCCTACCCATCAAAATGACTGCAAACTTGATTCTTCAGCAGAGGATGGGACTAAAGATATGGTAACAGATTCTGATCCTACACCGACGGAGAAAAAGGAAGGCGTTATAGAGATGGATGAAAGTAGTGATGCCGAGTTGAATGAGAACGCACAGAATTCTGATGCTGGAGTCATTGTATTGGATGAGTAA 4209 0.4098 MSSLVERLRVRSDRKPIYNIDESDDDDFLLNKPGTSQEKFERVVRSDAKEDLCQACGESGDLLSCETCTYAYHSRCLLPPLKGPAPDNWRCPECVSPLTDIDKLLDCEMRPTVDADGDDTKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKNHPRLKTKVNNFHRQMDSSNTSDEDFVAIRPEWTTVDRVLACRGDNDEKEYLVKWKELSYDECYWEYESDISAFQPEIERFNRFRSRSSKLAYIKQKSRDNDDAESKKQQKEFQQYEHSPKFLSGGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVSPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSSQARNVIREHEFYFPKKLKKIKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIDDPKEAFKQLVESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADEDDEAGKSRQIHYDAAAIDRLLDRDQVGHEEATLDDEEEDGFLKAFKVANFEYVDEAEAAAEEAAQKRAMETMNSSERTHYWEELLKDKFQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDEDDNYEAELTDGDSNSNGTTSGRRPYRKKARAADSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRYGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFASEHPQTPLFSDDILLRYPGLKGIRKWREEHDLLLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPVINLPLPGQMGSQVQNGANLTNAEVPSNESRENGGSDIAADGAQGSGDARNQTQLYPDSSMLYHFRDMQRRQVEFVKKRVLLLEKGVNAEYQKEYFGDPKANEVTNDELKTVPNATTNPSYKSGDTDTQMIDQLPQVETIAPEDASVACDSDPNRLKLVELYNEMCKVVEENPTLAREPEEVNAVKKLPSFEIICQDINRILTPTVEHGEVLGSKSLPTHQNDCKLDSSAEDGTKDMVTDSDPTPTEKKEGVIEMDESSDAELNENAQNSDAGVIVLDE 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02922 1402 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1054 - -
Car05g02922 1402 CDD CD2_tandem 189 240 - -
Car05g02922 1402 Coils Coil 838 858 - -
Car05g02922 1402 SMART chromo_7 189 243 IPR000953 -
Car05g02922 1402 SMART chromo_7 98 167 IPR000953 -
Car05g02922 1402 ProSiteProfiles Chromo and chromo shadow domain profile. 191 240 IPR000953 -
Car05g02922 1402 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Car05g02922 1402 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Car05g02922 1402 MobiDBLite consensus disorder prediction 1348 1379 - -
Car05g02922 1402 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1054 - -
Car05g02922 1402 CDD CD1_tandem 101 171 - -
Car05g02922 1402 Pfam SNF2-related domain 306 585 IPR000330 GO:0005524|GO:0140658
Car05g02922 1402 CDD SF2_C_SNF 607 733 - -
Car05g02922 1402 Gene3D - 97 187 - -
Car05g02922 1402 SMART PHD_3 52 95 IPR001965 -
Car05g02922 1402 Pfam CHD subfamily II, SANT-like domain 932 1066 IPR009462 GO:0003677|GO:0006338
Car05g02922 1402 ProSiteProfiles Chromo and chromo shadow domain profile. 99 181 IPR000953 -
Car05g02922 1402 MobiDBLite consensus disorder prediction 1147 1177 - -
Car05g02922 1402 SMART DUF1087_2 839 905 IPR009463 -
Car05g02922 1402 Pfam Chromo (CHRromatin Organisation MOdifier) domain 192 240 IPR023780 -
Car05g02922 1402 Pfam Chromo (CHRromatin Organisation MOdifier) domain 123 157 IPR023780 -
Car05g02922 1402 Pfam CHD subfamily II, DUF1087 844 902 IPR009463 -
Car05g02922 1402 MobiDBLite consensus disorder prediction 1336 1402 - -
Car05g02922 1402 Gene3D - 1036 1194 - -
Car05g02922 1402 SUPERFAMILY Chromo domain-like 174 241 IPR016197 -
Car05g02922 1402 SMART DUF1086_2 911 1069 IPR009462 GO:0003677|GO:0006338
Car05g02922 1402 SUPERFAMILY Chromo domain-like 65 175 IPR016197 -
Car05g02922 1402 Coils Coil 251 271 - -
Car05g02922 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 519 IPR027417 -
Car05g02922 1402 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Car05g02922 1402 Gene3D - 529 753 IPR027417 -
Car05g02922 1402 Gene3D - 279 528 IPR038718 -
Car05g02922 1402 MobiDBLite consensus disorder prediction 904 921 - -
Car05g02922 1402 SMART ultradead3 282 495 IPR014001 -
Car05g02922 1402 Pfam PHD-finger 53 95 IPR019787 -
Car05g02922 1402 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Car05g02922 1402 SMART helicmild6 638 722 IPR001650 -
Car05g02922 1402 MobiDBLite consensus disorder prediction 904 951 - -
Car05g02922 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 779 IPR027417 -
Car05g02922 1402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 96 IPR013083 -
Car05g02922 1402 Gene3D - 188 240 - -
Car05g02922 1402 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02922 Car-Chr5 74171945 74197171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02922 601 773 RAD5 or RAD16-like Gene Family AT5G22750 33.526 2.62e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car05g02922 SNF2_N 7.6e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02922 K11643 - gmx:100790230 2399.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03218 04 60560408 60574911 Car05g02922 05 74171945 74197171 PCT