Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02895 ATGGCTTCCAAATTATGTGACTCTTGCAAATCCGCCACCGCCACACTCTACTGCCGTCCCGACTCCGCCTTCCTCTGCACCACCTGTGATTCCAAAGTCCACGCCGCCAACAAGCTCGCCTCCCGTCACCCTCGCGTCACTCTCTGCGAAGTCTGCGAACAAGCTCCGGCGCACGTCACATGCAAAGCTGACGCCGCTTCTCTTTGCATCACCTGCGATCGTGACATCCACACTGCTAACCCCCTCGCCGCACGTCACGAACGTCTTCCGATTACTCCTTTCTTTGATTCCATCGATTCTCACTCCGTTAAGCCGATTCACCACAATAATAACCACTACGATACAGGAGAAGATGAAGCAGAAGCTGCTTCCTGGTTGATCTCTGATCCTAAAGCAGATCTCAACTGCTCTCCGTACATTTTCTCCGATTCCGAAGCTATTCCGTTCATGGATCTCGATTACGGCACTATCGATAACAAAAGCGACGTTGTCGTTCCCGTACACGGTAACTTCGAGCCTTTTTCTTACAAGATCAACAGCGTGCAGTTACAGACAGACCTAGAAACTCCGTCACAGTCACCGATGAGTCACAGTGTATCGTCGTCGTCGATGGATGTTGGAGTTGTTCCCGATGGAAACGCTGTATCGGATATATCGAACTGTGGATACGGCAAAGCGGTTGCGGCGGATCGAGAAGCGAGAGTGTTGAGGTATAGAGAGAAGAGGAAGAATCGAAGATTCGAGAAGACGATTCGTTATGCTTCTCGTAAAGCTTACGCGGAAACTAGGCCTAGGATTAAAGGTAGGTTTGCGAAACGCACTGATGCTGTTGATTCTCTTGCTGGATACGGCGTAGTTCCAACTTGTTGA 870 0.5034 MASKLCDSCKSATATLYCRPDSAFLCTTCDSKVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAASLCITCDRDIHTANPLAARHERLPITPFFDSIDSHSVKPIHHNNNHYDTGEDEAEAASWLISDPKADLNCSPYIFSDSEAIPFMDLDYGTIDNKSDVVVPVHGNFEPFSYKINSVQLQTDLETPSQSPMSHSVSSSSMDVGVVPDGNAVSDISNCGYGKAVAADREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDAVDSLAGYGVVPTC 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02895 289 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Car05g02895 289 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Car05g02895 289 ProSiteProfiles CCT domain profile. 231 273 IPR010402 GO:0005515
Car05g02895 289 CDD Bbox1_BBX-like 5 48 - -
Car05g02895 289 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 288 - -
Car05g02895 289 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Car05g02895 289 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 288 IPR045281 GO:0009909
Car05g02895 289 SMART bboxneu5 49 91 IPR000315 GO:0008270
Car05g02895 289 SMART bboxneu5 1 48 IPR000315 GO:0008270
Car05g02895 289 Pfam CCT motif 231 273 IPR010402 GO:0005515
Car05g02895 289 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Car05g02895 289 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02895 Car-Chr5 73928344 73930005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02895 1 288 C2C2-CO-like Transcription Factor Family AT5G24930 52.316 2.56e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Car05g02895 zf-B_box 7.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02895 - - mtr:MTR_3g105710 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02895 05 73928344 73930005 Car05g02895 05 73928344 73930005 ECH