Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02890 ATGGACATTGAAGTCCTCAATTCAATGTGGCCAGAAGATATTGGAACTGATGCTGGAAAACAGTTCAACATAGAAAAGCCAGGAAATGATCAAGACATGTTAGAAGAAGTAACAATCATAGAAGAACCAACTATAGCCGATTTCAAGCGTCTCATAGAACTAACAAATTTCACAGAAAAGGGTTCTTCTCAGTTAGCTTATCTTATGAAACATTGGGAGTATAAGCAAGCGAACGTCGCACGTCTTCTAAGAGAAGAACTCGACAACCTAAGCAAACAAAGGCAAGATGTTGAGCTAAGGAAGTTGGAGATATTGGAGGAGCATAGGTTTGAGGAAGAAAGATATGGTGGCGATAAACGACCGGTTTCTATATTGGATGACATTTATGATATATGGCAACAAGATGTACCTTGCAGGAAAAGTAATGTTGTTGTTCAAAACAAGAGAATTGAAATTGATGCTGAGTatgatactgttgtgtactggaaacagcgagcgatgcacttggaaaagcttttggaggctagtgttcaaagAGAAGAGACACTTGAACAAAAGTTGCTAGAAAGTATCAAGAATATTGAAAGACAGTCATCACCTGTTGAAGAACTGTCACAGATTCTGAAGAGAGCTGATAATTTCTTGCATTTCATACTCCAAAATGCTCCTGTTGTTATAGGCCATCAGGACAAAGAGTTGCGTTATCGCTTTATCTATAATCACTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACGGATGTCGAAATATTCACAGGATCTGGTGTTAAGGAGAATCAAGATTTTAAAAGAGAAGTTTTGGAGAAAGGATTGCCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGATCAAAGACATTCTTGATTTATGTAGAACCTGTTTTCAGCAAGGCAGGGGAGACGATTGGAATCAATTACATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTAGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACTATGAGAGCAAAACAAATGCTGGCAACAATGTCACATGAGATAAGATCACCACTGTCTGGAGTTGTTAGCATGGCTGAAATTCTTTCCACCACAAAACTTGATAGGGAACAAAGACAGCTCTTGGATGTCATGTTATCATCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAGCTACCAAATTTAGACCGAGAGAAGTAGTAAAGCATGTGCTTCAAACAGCTGCAGCATCATTGCAGAAAATCTTAACCTTAGAAGGACATGTAGCAGATGATGTACCGATCGAGGTCATTGGTGATGTTTTAAGAATTCGGCAAATTCTCACAAATTTAATCGGCAATTCCATCAAGTTTACTCATGAAGGAAAAGTTGGGATAAACCTTTATGTTGTTCAAGAGCCAACTTTTACAAAAGATGAAGGCACACTAAAGATTACTTCAGGCCATTCAACTATTTCTGTGAATGTAGTGAAAGAAAAAAAATATCTCTCAACAACACCTCAAAATCATGGATTTAATGATGAGTGTAGATCTCCGGTTAAAAGCGAATGCTCAATGAACGGAGACACCGAGGATCAACATCACTCAACAGAAACAACGGTGTGGATACGTTGTGATGTATATGATACAGGAATTGGAATACCAGAAAATGCAATACATAGTTTATTTAAAAGGTACATGCAAGTCAGTGTAGACCATGCTCGAAAATATGGTGGCACCGGGCTAGGACTAGCAATATGCAAACACCTGGTTGAGTTGATGGGGGGTCGTCTAACAGTGTCTAGCAAAGAACAGCATGGTTCTACCTTCACATTCATACTACCATACAAGGTCTCAATAGCTTGTGATAGTTCTGATTACTCAGATGAGCTCTCAGACATGGAGCATAATGATGCAGCTTCTGATGATACAACAGAATGTTTCTTCCAATTCCAACCACCAACTTTAGGCTCTCTATTCACCTCTAATGGAACAAACAGAACTCACAAGTTATTGCCACACAAATTTACTGGATTTTCTGAGAGTTCATTCTCATTTCCCTCTACTTCTAATGACATCATATCAAAAGGGTCATGTTCAGTTGATGGTTCATCTTCAGTGGTTGATGCTTCAGATATGTGTGAATCAGCTAGTTCATCTAGTCACACCCCAGAAATAAAGCACAAATTTTTGAAAAAGCATCCATATAATGCTCACGGTAATGcagacacaactaatcaatgtgttagtagcagcagTAATTCAGAAGTAACCAAATCCATATCAAAAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAATCTATGATGAAGCAGTTGGGTCATAACATCGATGTTGTCAATAATGGAGCAGAAGCCGTGCGTGCGGTTCAACGCTGTACTTATGACCTGGTTCTGATGGATGTCTGTATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTAGGACTTTTGAGGAGACAGGAAATTGGGATGCTGCAAGAAATGCTGGAATTAAGCAAAGTCTATCAGATCAAGATTATGAATGTTTTGTTCCATCTACAAAGCGGATCCCAATTGTTGCGATGACAGCAAATGCTTTATCAGACAGTGCTGAAGAGTGTTATGCTAATGGTATGGACTCATTTGTGTCAAAACCTGTGAGTTTCCAAAAATTGAGAGACTGTGTTGAACAATACCTAAAGTAA 2829 0.3701 MDIEVLNSMWPEDIGTDAGKQFNIEKPGNDQDMLEEVTIIEEPTIADFKRLIELTNFTEKGSSQLAYLMKHWEYKQANVARLLREELDNLSKQRQDVELRKLEILEEHRFEEERYGGDKRPVSILDDIYDIWQQDVPCRKSNVVVQNKRIEIDAEYDTVVYWKQRAMHLEKLLEASVQREETLEQKLLESIKNIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKENQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPIEVIGDVLRIRQILTNLIGNSIKFTHEGKVGINLYVVQEPTFTKDEGTLKITSGHSTISVNVVKEKKYLSTTPQNHGFNDECRSPVKSECSMNGDTEDQHHSTETTVWIRCDVYDTGIGIPENAIHSLFKRYMQVSVDHARKYGGTGLGLAICKHLVELMGGRLTVSSKEQHGSTFTFILPYKVSIACDSSDYSDELSDMEHNDAASDDTTECFFQFQPPTLGSLFTSNGTNRTHKLLPHKFTGFSESSFSFPSTSNDIISKGSCSVDGSSSVVDASDMCESASSSSHTPEIKHKFLKKHPYNAHGNADTTNQCVSSSSNSEVTKSISKKPKILLVEDNKINVMVTQSMMKQLGHNIDVVNNGAEAVRAVQRCTYDLVLMDVCMPVMNGLQATKLIRTFEETGNWDAARNAGIKQSLSDQDYECFVPSTKRIPIVAMTANALSDSAEECYANGMDSFVSKPVSFQKLRDCVEQYLK 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02890 942 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 471 648 IPR003594 -
Car05g02890 942 CDD HATPase_EvgS-ArcB-TorS-like 476 647 - -
Car05g02890 942 Gene3D - 790 942 - -
Car05g02890 942 ProSiteProfiles Response regulatory domain profile. 798 941 IPR001789 GO:0000160
Car05g02890 942 SMART HKATPase_4 471 650 IPR003594 -
Car05g02890 942 Gene3D - 325 423 - -
Car05g02890 942 PRINTS Bacterial sensor protein C-terminal signature 575 589 IPR004358 GO:0016310|GO:0016772
Car05g02890 942 PRINTS Bacterial sensor protein C-terminal signature 610 628 IPR004358 GO:0016310|GO:0016772
Car05g02890 942 PRINTS Bacterial sensor protein C-terminal signature 634 647 IPR004358 GO:0016310|GO:0016772
Car05g02890 942 CDD HisKA 359 421 IPR003661 GO:0000155|GO:0007165
Car05g02890 942 SMART HisKA_10 360 425 IPR003661 GO:0000155|GO:0007165
Car05g02890 942 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 414 648 IPR036890 -
Car05g02890 942 Gene3D PAS domain 194 324 - -
Car05g02890 942 CDD REC_hyHK_CKI1_RcsC-like 799 937 - -
Car05g02890 942 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 742 941 - -
Car05g02890 942 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 1 769 - -
Car05g02890 942 Coils Coil 177 197 - -
Car05g02890 942 Gene3D - 424 652 IPR036890 -
Car05g02890 942 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 359 425 IPR036097 GO:0000155|GO:0007165
Car05g02890 942 SUPERFAMILY CheY-like 795 942 IPR011006 -
Car05g02890 942 Coils Coil 80 107 - -
Car05g02890 942 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 1 769 - -
Car05g02890 942 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 742 941 - -
Car05g02890 942 SMART REC_2 797 937 IPR001789 GO:0000160
Car05g02890 942 Pfam His Kinase A (phospho-acceptor) domain 362 425 IPR003661 GO:0000155|GO:0007165
Car05g02890 942 ProSiteProfiles Histidine kinase domain profile. 367 650 IPR005467 -
Car05g02890 942 Pfam Response regulator receiver domain 799 866 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02890 Car-Chr5 73858933 73863806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02890 1 941 Histidine Kinase Gene Family AT5G10720 59.049 0.0 1108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car05g02890 HATPase_c 3e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02890 - - gmx:100811117 1494.56