Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02885 ATGAATGTAGATATGGATCATGTCAGCGACAGCACCACTCATGATAAAAAAAAATGTGAAGAAAATAAGAAGAAAATGTACAAAGGAGTTAGAAAGAGAAAATGGGGAAAATGGGTATCTGAAATAAGGCTACCAAATAGCAGAGAAAGAATATGGTTAGGGTCACATGATTCTGCTGAAAAAGCAGCTAGAGCATTTGATGCTGCACTTTACTGTCTCCGTGGTCGTCATGCTAATTTCAATTTCCCTGACACACCTTTCAATTTGGTTAATAATGTTAATAACTATAATAATTCCCTTACCCCACAACAGATTCAACAAATTGCTTCTAACTTTGCCAACAACATTAACCAACCACCAACTAATGTTGTTGataataataatcataataatGCTGCCTCCTCTTCTTCTAATACAAGTACTATTGATTGGACTTTTTTGAATGCCTTGGATGCTTCAACCGAAGATGCTAATTTTATTCATAATTATGGTGACTTAGAAAAGATGCATTCTGGTGAGTTATTGTATTCAATTCCACCACCATTTTTTGAGGATGATAATAATCGGAACCAAATTGAAGCTAATATTGATGCTGGTGATTATGATGACCCTTTTTCTCATCCATCATTCCTTTGGAATTGGAACTTCTGA 651 0.3456 MNVDMDHVSDSTTHDKKKCEENKKKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSHDSAEKAARAFDAALYCLRGRHANFNFPDTPFNLVNNVNNYNNSLTPQQIQQIASNFANNINQPPTNVVDNNNHNNAASSSSNTSTIDWTFLNALDASTEDANFIHNYGDLEKMHSGELLYSIPPPFFEDDNNRNQIEANIDAGDYDDPFSHPSFLWNWNF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02885 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 216 - -
Car05g02885 216 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Car05g02885 216 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Car05g02885 216 MobiDBLite consensus disorder prediction 1 20 - -
Car05g02885 216 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Car05g02885 216 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Car05g02885 216 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Car05g02885 216 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Car05g02885 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 14 216 - -
Car05g02885 216 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Car05g02885 216 Pfam AP2 domain 27 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02885 Car-Chr5 73822353 73823495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02885 8 150 AP2-EREBP Transcription Factor Family AT1G74930 46.405 7.17e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car05g02885 AP2 1.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02885 - - mtr:MTR_3g105510 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02885 05 73822353 73823495 Car05g02885 05 73822353 73823495 ECH
Car05g02885 05 73822353 73823495 Car04g03258 04 61018710 61019381 ECH