Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02882 ATGGCGGATGTGATGGTAATGAAAGAGATTGAAGACAAAGCGTCGCTTCTCGGAATCGATCTCTCTACAATTGATCTCGATTCCATTCATTTCCCACCAGGCGAAGACTGTGGAATCCCCAGTGATGACGAAGATATATATCAAGAGGAGAATCTTGAATTTGATTCTGGCTTTGGCAACATTATAGTAGTGGATAATCTTCCTGTTGTTCCAAAGGAGAAATTTGAGAAGCTTGAAGGTGTTGTTCGTAAAATTTACAGTCAGATTGGTGTTATCAAGGATGATGGCCTATGGATGCCCGTCGATCCTGTCACTGAAAAGTCCTTAGGTTACTGCTTTATTGAGTACAATACTCCTCAGGAAGCCGAGCTTGCTAGAGAGAAAACTCATGGATACAAATTGGATCGTTCACACATATTTGCCTTGAGTATGTTTGATGATTTTGACCGGTTTATGAAAGTTCCAGATGAGTGGGCTCCTCCTCCAAATAAGGAATATGCTCCTGGGGAAAATCTTCAACACTGGCTTACTGATGCTAAAGCCCGAGACCAGTTTGTTATTCGTGCTGGTTCAGAAACCGAGGTTTTGTGGAATGATGCTAGACATTTAAAGCCTGACCCTGTTTATAAACGTGCATTTTGGACGGAGAGTTATGTTCAATGGTCTCCTTTGGGCACATACTTGGCAACAGTTCACCGGCAGGGGGCAGCAGTCTGGGGAGGAGCTACAACCTTCAACCGTCTCATGCGTTATGCTCATCCTCAGGTCAAGCTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACATATAGCAGCCATGAACCAAGCAATCCTCGAGATGCTAATAGGGTTGTGATAAATATATTTGATGTGAGGACTAGTAAAGTGATGAGAGATTTTAAAGGAAGTGCTGATGATTTTGCTATTGGAGGTACCGGGGGTGTTACAGGAGTGTCATGGCCTGTTTTCAAATGGAGTGGTGGAAGAGATGATAAGTACTTTGCAAGGATGGGGAAAAATGTACTTTCTGTATATGAGACAGAAACATTTTCTCTTGTTGACAAAAAATCCTTGAAGGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGACCCAATCATCTCACTGTTTGTTCCTGAGTCCGGAGGTGGTAACCAACCTGCTAGAGTAAGTCTTGTTCAAATCCCCAGCAAAGAAGAACTCAGGCAAAAGAACCTTTTTAGTGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGGGATTACCTTGCTGTTAATGTAGACCGATATACCAAAACAAAGAAAAGCACTTACACAGGCTTTGAGCTTTTCCGCATAAAAGAACGGGACATACCCATTGAAGTTCTAGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCTTGGGAACCAAAGGGACATAGGTTTGCTATTATTCATGGTGATAACCCTAAGCCTGATGTCAGTATCTACTCTATGAAGACTGCTCAAAACACTGGCCGGGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAACGCTTTGTTTTGGTCACCTGCAGGTCGCTTTATTGTACTAGCAGGGTTGAAAGGTTTCAATGGACAGTTGGAATTTTACAATGTTGATGAGCTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACTGATGTTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTGACTTCAGTTCATGAAATGGAAAATGGATTCAATATATGGTCTTTCAATGGCAAACATCTTTATCGGATATTGAAGGATCACTTCTTTCAGTACTTATGGAGACCAAGGCCACCATCTTTCTTGACTCCCGAGAAAGAGGAAGAGATTGCAAAGAATTtgaagaagtacagtaagaaatatgaagctgaagatcaagatgTTTCGTTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGTAGGATCTTGAAGGAAGAGTGGGACAAGTGGGTCAGTGAATGGAAGCTGATGCACGAAGAAGAGAAGTTAGTGAGGCAAGACCTGAGGGATGGAGAAGCCAGTGACGAGGAAGAGGAATACGAAGCAAAGGACATTGAAGTTGAGGAAGTAGTCGATGTTACCAAAGAGATCCTTCATTTTGAGTTGAACCACTCAGTGGTTGCTGTTATGGGTGGTGAGGGTAGAGTTGAAATTGTGAGTGGCAAAGGGTGCTCGAGATTGTTTTCATCTTCATTCAGAAATCTTCATCCATTGGAGAAAATGTCTCCTGTTTCATCCTCTTTGCAACTACCATCAACTGCTCCTTTTGCTGGTCTTGTTATATGCGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAAGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATCTTCATCCTCAATGTACCCATTTGGTGTACAGCTTTGGTGGACACAAATTGGAACATGCGCTGAAGCACGGAGCAAAAAATGGTCTCTTTGTTGTCACACTGGGCTGGTTTGTCGATAGTGTCAGGAAAAACGTAAGGTTGACTGAATCACTTTATAGTGTGAAGAGTTATGGGGATGACAATATGCACTTGGATGATTTTAGACTGGTTCCTGGGTATACAAATGCTGGAAATTGTCTTCCTGCAAGAATATATGAAACTAAGCATACTCATCCTGGGAGAGATTCTAATAGATGTTTGGACTCAACTTTGTCTGGTTGCTCCATCTATGTTGATCCAGGCATTTCATCCGAATTGCGGAACAAGGTTGTTGAGAGTGCTTCAAGCGAAGGTGCGAGTTTTGCGGAACAATGGTTTGTTGGCTGCAACGTTAGTCATGTAGTGACTGAAGGGACATCCATTCAAAGATATCTTGGATACTCTAGTAACCTCATTACACCACTGTGGATTCTCAAAACAGCTAAGGAGAAACAAGTGCAAAGACTTGTTAACATGTCTGTTGATTTGGCAAGACAAGTTGGTTTGAAGCTTGAAGACATTCATAATGGCATTTCGAGGAAGGAAGTAGTAAAGCAAAAAGTCGACGACAATCTTCACGGCAGCAAAAGTGAAGTTGGTTACAAAGAAAGACAGCAAATTGTAAATTCAGCAAAAAAAGGTGTCAGAAGTCGCCGTGGTCGTCGGATGCAGACTTGTCAGACTCCAATCCGTCCCATAACACCTAACAACCTTCTGGACTCTATCTGCTGGTCAATATCAGAGACAACTTCGACTGCTTCGATTTACACAGATTCTTTCAGTGCCGAAGATCCTAACGAAAATCATACTTCAATATTTTTTGATGCAAAAGGGGATGGAAAGGATTCAGACGCTTCATTTTCAAACTCCACGCGTACTCTAACAGAAAGTGAGAAATCTGAGTTGATATTTAAAAATCATTTTCTCACCATACTCTTCCCAATTGACCGGTTTTCCGAGATAGGCCCTTCTTCAAGAACATTTTTTAGCCATGACGGTTTTACATGTCTGCAGGTGTTAGATCATATCCATGCATTTTATCAGGAGAACATGTCAAGCCATGAAATAGAATTGGCAATTCATACAGATTCAAGACACGCGGATAGGCTTCGATCAATGTACTCCAGTAAGGAAACATCAGAGTGTGGGTATGTGATGTTCAAACGAATTGAATTTTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAGCGCGTAAGTGGGGATAACAACTCCAATGTGTATGAGTTAGTACTTAGGGCTTAA 3747 0.415 MADVMVMKEIEDKASLLGIDLSTIDLDSIHFPPGEDCGIPSDDEDIYQEENLEFDSGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYSQIGVIKDDGLWMPVDPVTEKSLGYCFIEYNTPQEAELAREKTHGYKLDRSHIFALSMFDDFDRFMKVPDEWAPPPNKEYAPGENLQHWLTDAKARDQFVIRAGSETEVLWNDARHLKPDPVYKRAFWTESYVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTSKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFSWSPTDPIISLFVPESGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDNPKPDVSIYSMKTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQYLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRILKEEWDKWVSEWKLMHEEEKLVRQDLRDGEASDEEEEYEAKDIEVEEVVDVTKEILHFELNHSVVAVMGGEGRVEIVSGKGCSRLFSSSFRNLHPLEKMSPVSSSLQLPSTAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVYSFGGHKLEHALKHGAKNGLFVVTLGWFVDSVRKNVRLTESLYSVKSYGDDNMHLDDFRLVPGYTNAGNCLPARIYETKHTHPGRDSNRCLDSTLSGCSIYVDPGISSELRNKVVESASSEGASFAEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKQVQRLVNMSVDLARQVGLKLEDIHNGISRKEVVKQKVDDNLHGSKSEVGYKERQQIVNSAKKGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISETTSTASIYTDSFSAEDPNENHTSIFFDAKGDGKDSDASFSNSTRTLTESEKSELIFKNHFLTILFPIDRFSEIGPSSRTFFSHDGFTCLQVLDHIHAFYQENMSSHEIELAIHTDSRHADRLRSMYSSKETSECGYVMFKRIEFLGSRTSFEMLKRVSGDNNSNVYELVLRA 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02882 1248 Pfam twin BRCT domain 773 838 IPR001357 -
Car05g02882 1248 SUPERFAMILY RNA-binding domain, RBD 51 141 IPR035979 GO:0003676
Car05g02882 1248 CDD BRCT_TopBP1_rpt2_like 769 846 - -
Car05g02882 1248 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Car05g02882 1248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Car05g02882 1248 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Car05g02882 1248 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Car05g02882 1248 Gene3D - 199 384 IPR015943 GO:0005515
Car05g02882 1248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 137 IPR000504 GO:0003723
Car05g02882 1248 Gene3D - 414 617 IPR015943 GO:0005515
Car05g02882 1248 ProSiteProfiles BRCT domain profile. 901 989 IPR001357 -
Car05g02882 1248 SUPERFAMILY BRCT domain 769 857 IPR036420 -
Car05g02882 1248 CDD RRM_eIF3B 59 142 IPR034363 -
Car05g02882 1248 Gene3D BRCT domain 768 858 IPR036420 -
Car05g02882 1248 Pfam Eukaryotic translation initiation factor eIF2A 406 605 IPR013979 -
Car05g02882 1248 ProSiteProfiles BRCT domain profile. 765 856 IPR001357 -
Car05g02882 1248 PANTHER BNACNNG51870D PROTEIN 5 712 - -
Car05g02882 1248 SMART BRCT_7 903 979 IPR001357 -
Car05g02882 1248 SMART BRCT_7 767 846 IPR001357 -
Car05g02882 1248 SMART rrm1_1 61 142 IPR000504 GO:0003723
Car05g02882 1248 Gene3D - 55 154 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02882 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 77.746 0.0 1196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02882 K03253 - gmx:100817394 1365.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02882 05 73785938 73797937 Car05g02882 05 73785938 73797937 ECH