Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02881 ATGGATTCATCAGACCCTAATCATAATCAAAACCAAAGCAATAATCGCAAGCGAACCTTCGATCACTTGTATACAAAACCCCATGCCGAAGAAGAAGAAGATTCTCCTATTTCCAACATGGACCCTAGAAGGTATCAGTTAGAGGTGTTTGAAGTTGCAAAGAGGAAGAACACAATAGCAGTAATGGATACAGGTTCTGGCAAAACATTGATAGCTATAATGCTTATAAAACACATTGGTCAAACTATTATTAGGTCTAAAGGTGAAAAGAAGTTGATTGTTTTCTTAGCTCCTACTGTTCACCTTGTGAATCAGCAATACAAGAATATAAAACATAATACAGATTTTCAAGTTGAGGAATACTATGGAGCTAAAGGAGTTGATACGTGGAATTTAAAGAGCTGGCAAAAGGAAATTAAAGCCAATGATGTACTGGTTATGACACCCCAGATTCTTTTGGACGCCTTAAGAAAAGCATTCTTGAGTGTAGAAATGATATGCTTGATGATTATTGATGAGTGTCATAGAGCAACTGGCAACCATCCCTATGTAAAAATAATGGAGGAATTTTATTACCAAGCTAATGAAAAGCCAAGGATTTTTGGGATGACAGCATCGCCAGTTGGTAAAAGAGGTGTTTCCTCTACTTTGGATTGCGAGGGTCAGATATTAGATCTTGAAAACATCTTGGATTCTAAGAGATATACTGTTGTAGATCGGACAGAGATGGATGTATATATCCCATCTGCAAAAGAGAGTTGTAGATTTTATGAACAAGCAAGATTTCCCGCTTTGAGTTTGAAGCCAAAAATTGAAGCCTCGTGGTCGAAGTGTAATGTGTTGTCAGAATTTCAAAGTGACTATAAGGATATGGACAATAAATTTAAGACACTGCATCAGCAGATGTCCAATGAACTTGCAAAAATTTTATACTGCGTCGAAGATCTTGGACTGTTGTGTGCTTATGAGGCTGCTAAAATCTGTCATGAGAAGTTCTCCAAAATTCAGGGAGAGTGTGAAGTTTACAGAAAATGCTATCTTCAGTGTGTAACTGTCATTGAAGAAGTAATCCAAATAATTGAAGAATCCCTCCATCTTGCAGCTGATAAAATGACTTTGGATGTTGAATTTGATTGTTCAAAGGCTGTAGACATGGGATACATATCACCAAAATTACTTGAACTCATTAATCTCCTCCAGACATTTGGAGAATCTAGTCAGTTATCGTGCCTCATTTTTGTTGAAAGAATCATTACAGCTAAGGTGATTGAAAGATTTGTAAAAGCAGTTCCCCAGATATCTCATTTTACAGTTTCCTATGTAACTGGAAGCAATACATCGGCTGATGCACTGACTCGTAAGAGGCAGATAGAGATATTGGAATCATTCCAATCTGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCGTGTGTGATACGTTTTGACCTCCCCAAGACAGTTTGTAGTTATATCCAGTCTCGTGGAAGATCTAGGCGTGCTAACTCTCAATTTGTTTTGATGTTGGAGAGGGGAAGCTTGAAGCAAAGAAATCAACTCTTTGACATAATCAGGAGTGAGCGCTCCATGACTCATGCAGCTGATAATAAAGACCATGAATCCAATTTAAGGGCTTTTTCAGTAAGGAAAACAGAAGCCTACTATGTGGATTCTACTGGCGCATCAGTCACTTTAGATTCTAGTGTCAGTCTCATAAATCAATACTGCGAAAAGCTCCCGCGTGATAAGTACTCTAACGCAAAGTCAAATTTTGAGTTTCTGCCTGTGGAGGAAGGTTACGAGTGTAAGTTAATATTACCGCCTAATGCAGCTTTCCAAATACTAGTTGGTCCTTCAGGTAAAGATGTTCGGCTCGCAAAGAGTCTTGTATGCTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGAGCCTTAAATGACCATCTTGTCCCATTCATTGAAGATCCTTCAGAAGCAGACCCAATTATAAAAAGCAAGGAATCAAGTTCAGGTGCAGGAACCACAAAAAGAAAGGAGTTACACGGCACAGCCAGCATTCAGGCATTATGTGGTTCATGGGGAGACAAAGTTGATGGAGCCAAATTTTATGCTTATAAATTTGATTTTAAATGTAATATTGCTCATGAACTTTATTCTGGATTCGTTCTTCTGATGGAGTCAAAGCTTGACGAAGATGTCGGAAATCTGGAATTAGATCTTTATTTAATCTCTAAGACTGTGAAGGCTTCTGTCATTTCATGCGGGCAAGTTGATTTGGATTCTGAAGAGGTGATGAAAGCAAAATGCTTCCACGAGCTTCTTTTCAACGGTTTGTTTGGGAGATTGGTTTTCAAGTCCAAATCGGTCAAAGGAAAATGGGAGTTTTTGCTGCAGAATGACACAAACTCGTTGTGGAGTCCACAAAACTTATATTTGCTTCTACCACTCGAGAAGTCAAATGATATATGTTTGCAAATACATTGGCCTGCAATCAGTTCTTGTGCTTCTGCTATTGACTTTTTAAGGCGGAAATTTTCATTGGCGGTGGGAGACTCTGATGATAACAGCAAAATCATATCACCACCTTGCAATACCAGTTCGTTGGATATAGAATGTGAAAGCACAAACAAGATGCTTCACTTTGCCAATTGTGCTGTTGACGTTAGTAATGTGAAAGACATGGTAGCTTTGGCAATTCATACTGGGAAAATGTATTGCATCATTGAAATAGTTGCCGACTTATCTGCTGAAAGTCCTTTCGATGGAAACAATGGAAAGTCTGAAGCAGTGACGTTCTCGCAATATTTCACTAAAAGGTACGGGATCACGCTAAGACATCCAGAACAGCCTTTGTTAAGGTTGAAGCAAGGTCATAATGCACACAATCTCTTTTTGAACCTTCACGATGAAGCAGATGGTGGGGACAAGTCATCACAAATTGGCCCGGTAATCCCTAAAGCCCCTGTGCATGTTCACATGCCACCTGAGCTTCTTTTCATTCTGGATGTTAAAAGAGATGTGTTGAAGTCAATGTACTTGCTACCATCTCTTATGTACCGTATTGAATCCCTCATGCTATCGAGTCAGCTTAGAGCAGAGATAAATGGTCACGCTAACAATTTCAAGATACCTAGCTCTCTGATTCTAGAAGCACTAACGACTTTAAGATGCTGCGAAAAGTTTTCTATGGAGCGTCTTGAGTTGCTGGGAGATTCTGTTTTGAAATATGCAGTTAGCTGTCATCTCTTTCTTAAATATCCTAAAAATCATGAAGGACAATTATCTGCCAAAAGACAATGGGCTGTTCGTAACTCAACCCTATATAAGCGCGGAATAGATCACAAATTACAGGGATATATTCGAGACTCTGCATTTGAACCACGCCGTTGGATTGCTCCAGGACAGCACTCTATACACACTGTTTCTTGTGATTGTGGGTTGGAAACCCTAGAAGTTCCTTTAGATGAAAAGTTCCACACTGAAGATCCAAAGATTGTGGTTGGGAAGTTGTGCAACAGGGGTCACCGCTGGATGTGCTCAAAGACTATTGCTGACTGTGTTGAAGGTCTCATAGGAGCGTACCACGTCGGTGGCGGATTGATTGCTTCACTTCACGTGATGAAATGGCTTGGAATCGATTCGGAACTTGAACCATCCATGGTTGATCAAGCCATTACTTCTGCATCTTTGCACACATATATGCCAAAAGTAAACGAGATTGCAAGCCTTGAGGAGAAAATTGGATACGAATTTTGTGTTAAGGGACTCTTAGTCGAGGCGAGCACACATTTGTCTGAGTCAGAACATGGAACTGGCTGCTGTTATGAGAGGCTTGAATTCCTTGGTGACTCGGTATTGGACCTGCTCATCACATGGCATCTATATCAAAATCACACAGAAATTGACCAGGGAGAGTTGACTGACTTGCGCTCTGCTTCAGTCAATAATGAAAATTTTGCTCAAGTTGCTGTTCGACGAAACCTTCATCAGCACCTTATGCATAGCTCAGGATTATTACAAGGCCAAATATCAGAATATGCAAAAGTCATTTCTGAGTCAGAAGACAACACCATATCACTGCCAGGGATAAAAGCTCCAAAGGCACTTGGCGATCTAGTAGAAAGTATTGCTGGGGCTGTATTAATTGATACCAAGCTCAACCTTGAGTTAGTATGGAAGGTTTTCAATCCTCTGTTATCTCCCATTGTTACTCCTGATAAACTTGAACTGCCTCCGTTTCGTGAATTAAATCAATTATGTGATTCTCTCGGATATTTTGTAAAAGTAAAAGAAAGTCGTGAAAAGAAAGGATCCATGGAGAATGTTGTGCTTAGTGTACAGCTGCCAAATGCCCTACTGGTTCAAGAGGGAAAGGGTCCGAATAAAAAAAATGCGAAAGGAGAAGCTGCTTTTCATTTGTTGAAGAAACTTGAGAAAAGGGGAATTTCATATAGCAAGGGAAAAGGAGTAATAGATCTCAGTATTCCTTCTTGTCAAACTGAAGAACAACCCCCAAAACCAGTAGCACATAAAAAGCCCAAATTGGACAAAACTAACCTAACTGCAAATGCATCTACTTGTGATCAAAAGGACACTTCCACTTCCAGTGGAGCCTCTGATTTTAGTGGTTCCATTCCAGTCATTTCATCAATTAGTACGAAGAAGGGAGGACCGCGAATGCAACTATATGAACTTTGCAAGAAAAAGCAGTGGCCTTTGCCTGCATTTGATTCAACAGAATATAAAGATAGAACTCAGTTTGGATCCTGTGAAGGCTTGGAAGGAAGCAAAGGACAGAACTGTTTTGTGTCCAAAATAACTCTGTGTATACCAAATGATGGTAATATAGAATGCCAAGGAGACGTTAGAAGTGATAAGAAGAGTTCATTTGACTCTGCTGCAGTTAAAGTGCTTAATGAGCTACAACGACTCGGAAAACTTAAGATTGATGATGTTTCCCAGTAG 4992 0.3978 MDSSDPNHNQNQSNNRKRTFDHLYTKPHAEEEEDSPISNMDPRRYQLEVFEVAKRKNTIAVMDTGSGKTLIAIMLIKHIGQTIIRSKGEKKLIVFLAPTVHLVNQQYKNIKHNTDFQVEEYYGAKGVDTWNLKSWQKEIKANDVLVMTPQILLDALRKAFLSVEMICLMIIDECHRATGNHPYVKIMEEFYYQANEKPRIFGMTASPVGKRGVSSTLDCEGQILDLENILDSKRYTVVDRTEMDVYIPSAKESCRFYEQARFPALSLKPKIEASWSKCNVLSEFQSDYKDMDNKFKTLHQQMSNELAKILYCVEDLGLLCAYEAAKICHEKFSKIQGECEVYRKCYLQCVTVIEEVIQIIEESLHLAADKMTLDVEFDCSKAVDMGYISPKLLELINLLQTFGESSQLSCLIFVERIITAKVIERFVKAVPQISHFTVSYVTGSNTSADALTRKRQIEILESFQSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVCSYIQSRGRSRRANSQFVLMLERGSLKQRNQLFDIIRSERSMTHAADNKDHESNLRAFSVRKTEAYYVDSTGASVTLDSSVSLINQYCEKLPRDKYSNAKSNFEFLPVEEGYECKLILPPNAAFQILVGPSGKDVRLAKSLVCLEACKKLHQMGALNDHLVPFIEDPSEADPIIKSKESSSGAGTTKRKELHGTASIQALCGSWGDKVDGAKFYAYKFDFKCNIAHELYSGFVLLMESKLDEDVGNLELDLYLISKTVKASVISCGQVDLDSEEVMKAKCFHELLFNGLFGRLVFKSKSVKGKWEFLLQNDTNSLWSPQNLYLLLPLEKSNDICLQIHWPAISSCASAIDFLRRKFSLAVGDSDDNSKIISPPCNTSSLDIECESTNKMLHFANCAVDVSNVKDMVALAIHTGKMYCIIEIVADLSAESPFDGNNGKSEAVTFSQYFTKRYGITLRHPEQPLLRLKQGHNAHNLFLNLHDEADGGDKSSQIGPVIPKAPVHVHMPPELLFILDVKRDVLKSMYLLPSLMYRIESLMLSSQLRAEINGHANNFKIPSSLILEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLFLKYPKNHEGQLSAKRQWAVRNSTLYKRGIDHKLQGYIRDSAFEPRRWIAPGQHSIHTVSCDCGLETLEVPLDEKFHTEDPKIVVGKLCNRGHRWMCSKTIADCVEGLIGAYHVGGGLIASLHVMKWLGIDSELEPSMVDQAITSASLHTYMPKVNEIASLEEKIGYEFCVKGLLVEASTHLSESEHGTGCCYERLEFLGDSVLDLLITWHLYQNHTEIDQGELTDLRSASVNNENFAQVAVRRNLHQHLMHSSGLLQGQISEYAKVISESEDNTISLPGIKAPKALGDLVESIAGAVLIDTKLNLELVWKVFNPLLSPIVTPDKLELPPFRELNQLCDSLGYFVKVKESREKKGSMENVVLSVQLPNALLVQEGKGPNKKNAKGEAAFHLLKKLEKRGISYSKGKGVIDLSIPSCQTEEQPPKPVAHKKPKLDKTNLTANASTCDQKDTSTSSGASDFSGSIPVISSISTKKGGPRMQLYELCKKKQWPLPAFDSTEYKDRTQFGSCEGLEGSKGQNCFVSKITLCIPNDGNIECQGDVRSDKKSSFDSAAVKVLNELQRLGKLKIDDVSQ 1663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02881 1663 CDD RIBOc 1265 1415 IPR000999 GO:0004525|GO:0006396
Car05g02881 1663 Pfam PAZ domain 899 1032 IPR003100 GO:0005515
Car05g02881 1663 CDD RIBOc 1055 1219 IPR000999 GO:0004525|GO:0006396
Car05g02881 1663 Gene3D - 1420 1493 - -
Car05g02881 1663 Gene3D - 383 545 IPR027417 -
Car05g02881 1663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 517 IPR027417 -
Car05g02881 1663 PANTHER DICER-RELATED 32 1655 - -
Car05g02881 1663 CDD DEXHc_dicer 42 237 - -
Car05g02881 1663 MobiDBLite consensus disorder prediction 1 18 - -
Car05g02881 1663 Pfam Dicer dimerisation domain 578 663 - -
Car05g02881 1663 Gene3D - 36 273 IPR027417 -
Car05g02881 1663 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1420 1488 IPR014720 -
Car05g02881 1663 SUPERFAMILY RNase III domain-like 1248 1414 IPR036389 GO:0004525|GO:0006396
Car05g02881 1663 SMART ultradead3 38 238 IPR014001 -
Car05g02881 1663 Gene3D Ribonuclease III domain 1037 1219 IPR036389 GO:0004525|GO:0006396
Car05g02881 1663 Gene3D - 1573 1652 - -
Car05g02881 1663 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 554 IPR001650 -
Car05g02881 1663 ProSiteProfiles PAZ domain profile. 899 1011 IPR003100 GO:0005515
Car05g02881 1663 ProSiteProfiles Ribonuclease III family domain profile. 1036 1208 IPR000999 GO:0004525|GO:0006396
Car05g02881 1663 Gene3D paz domain 883 1009 - -
Car05g02881 1663 CDD SF2_C_dicer 387 519 - -
Car05g02881 1663 SUPERFAMILY RNase III domain-like 1049 1226 IPR036389 GO:0004525|GO:0006396
Car05g02881 1663 SMART PAZ_2_a_3 874 1035 IPR003100 GO:0005515
Car05g02881 1663 MobiDBLite consensus disorder prediction 19 39 - -
Car05g02881 1663 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 32 1655 - -
Car05g02881 1663 SMART riboneu5 1055 1228 IPR000999 GO:0004525|GO:0006396
Car05g02881 1663 SMART riboneu5 1264 1417 IPR000999 GO:0004525|GO:0006396
Car05g02881 1663 Pfam Ribonuclease III domain 1073 1206 IPR000999 GO:0004525|GO:0006396
Car05g02881 1663 Pfam Ribonuclease III domain 1285 1393 IPR000999 GO:0004525|GO:0006396
Car05g02881 1663 Pfam Helicase conserved C-terminal domain 392 512 IPR001650 -
Car05g02881 1663 Gene3D Ribonuclease III domain 1245 1417 IPR036389 GO:0004525|GO:0006396
Car05g02881 1663 ProSitePatterns Ribonuclease III family signature. 1285 1293 IPR000999 GO:0004525|GO:0006396
Car05g02881 1663 ProSiteProfiles Ribonuclease III family domain profile. 1249 1394 IPR000999 GO:0004525|GO:0006396
Car05g02881 1663 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 578 668 IPR005034 GO:0016891
Car05g02881 1663 Pfam Type III restriction enzyme, res subunit 53 207 IPR006935 GO:0003677|GO:0005524|GO:0016787
Car05g02881 1663 Gene3D Dicer dimerisation domain 573 669 IPR038248 -
Car05g02881 1663 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 207 IPR014001 -
Car05g02881 1663 SMART helicmild6 417 512 IPR001650 -
Car05g02881 1663 MobiDBLite consensus disorder prediction 1504 1549 - -
Car05g02881 1663 MobiDBLite consensus disorder prediction 1 39 - -
Car05g02881 1663 SUPERFAMILY PAZ domain 899 1011 IPR036085 GO:0005515
Car05g02881 1663 MobiDBLite consensus disorder prediction 1527 1549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02881 Car-Chr5 73771667 73784370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02881 442 510 Eukaryotic Initiation Factors Gene Family AT1G72730 43.478 3.45e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02881 K11592 - gmx:100806831 2382.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02881 05 73771667 73784370 Car05g02881 05 73771667 73784370 ECH
Car07g00405 07 3573030 3583526 Car05g02881 05 73771667 73784370 ECH