Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02877 ATGAGTTCTAAAAAGATTACATGGAAGTCCTTGGTCTTGATCTTAGGTTGTTACAAGACCAAAAACACCTTAGATGAAACAGAGAAACGAGGTTTAAAACATGGTTCTTTCAAAAGGCTATGTCTCTCTGATATAAGCATTAATTCTACAAGCTCTAGTCAAGCTATTGAGGATCTTTCAGTTTCTTTAGCTGGCTCAAAGCTTTACACATTCACCTTAGAGGAGTTAAGAGAAGCAACACATGACTTTTCATGGAGTAATTTGCTAGGTGAAGGAGGGTTTGGACCTGTTTATAAGGGTTTTGTTGATGATAAACTTAGACATGGTTTGAGGGCTCAACCTGTTGCTGTTAAACGGCTCAACTTGGATGGCTCACAAGGTCACAGAGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTTAGACATCCACATCTTGTAAAGTTAATTGGATATTGTTGTGAGGAGGAGCAAAGGCTTCTGGTGTATGAATACATGGCAAGAGGGAGCTTGGAGAATCAATTGTTCAGAAGATACTCTGCTACCTTACCATGGTCAACCAGAATGAAAATTGCATTAGGTGCAGCTAAAGGTCTAGCCTTCCTTCATGAAACAGATAAACCTGTAATATATAGGGATTTCAAAGCTTCAAATATATTACTCGACTCGGATTACACGGCTAAACTATCAGACCTTGGACTAGCAAAAGATGGTCCTGATGGAGAAGAAACACATGTGACAACAACATGCATAATGGGAACAAAAGGTTATGCTGCTCCTGAGTATATCATGTCAGGCCACCTTTCTACAAAGAGTGATGTGTATAGCTATGGAGTTGTGTTATTGGAACTGCTTACAGGCAAGAGGGTACTGGACAAAAGCAGATCAAATAGAGAGAGAAACTTGGTGGAATGGGCAAGGCCTATTTTGAGAGATCAAAGAAAGCTTCTTCATATCACAGACTCAAGATTAGAGGGTCAGTTTCCTATTAAAGGAGCTTTGAAAGTTGCTGCATTGACTTATAAATGTTTGAGTCACCACCCAAATCCAAGGCCTACTATGAGTGATGTGGTAAAGATATTGGAATCACTTCAGGATTTTGATGATGTGATCATAGGACCATTTGTGTATGTAGCAGTTAGTGAAAATGGCCAATGA 1158 0.3964 MSSKKITWKSLVLILGCYKTKNTLDETEKRGLKHGSFKRLCLSDISINSTSSSQAIEDLSVSLAGSKLYTFTLEELREATHDFSWSNLLGEGGFGPVYKGFVDDKLRHGLRAQPVAVKRLNLDGSQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEQRLLVYEYMARGSLENQLFRRYSATLPWSTRMKIALGAAKGLAFLHETDKPVIYRDFKASNILLDSDYTAKLSDLGLAKDGPDGEETHVTTTCIMGTKGYAAPEYIMSGHLSTKSDVYSYGVVLLELLTGKRVLDKSRSNRERNLVEWARPILRDQRKLLHITDSRLEGQFPIKGALKVAALTYKCLSHHPNPRPTMSDVVKILESLQDFDDVIIGPFVYVAVSENGQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02877 385 Gene3D Phosphorylase Kinase; domain 1 43 165 - -
Car05g02877 385 Gene3D Transferase(Phosphotransferase) domain 1 166 371 - -
Car05g02877 385 Pfam Protein tyrosine and serine/threonine kinase 86 361 IPR001245 GO:0004672|GO:0006468
Car05g02877 385 PANTHER OS01G0588500 PROTEIN-RELATED 21 384 - -
Car05g02877 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Car05g02877 385 ProSiteProfiles Protein kinase domain profile. 83 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02877 385 CDD STKc_IRAK 89 364 - -
Car05g02877 385 PANTHER KINASE 1B 21 384 - -
Car05g02877 385 SUPERFAMILY Protein kinase-like (PK-like) 60 363 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02877 Car-Chr5 73726537 73728904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02877 70 361 Glycoside Hydrolase AT3G07070 51.525 1.33e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Car05g02877 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02877 - - gmx:100805771 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02877 05 73726537 73728904 Car05g02877 05 73726537 73728904 ECH
Car05g02877 05 73726537 73728904 Car04g03263 04 61073437 61076764 ECH
Car07g00375 07 3292554 3294629 Car05g02877 05 73726537 73728904 ECH
Car01g01253 01 15594614 15599018 Car05g02877 05 73726537 73728904 ECH
Car07g03021 07 57042093 57044862 Car05g02877 05 73726537 73728904 ECH