Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02871 ATGGCCACTCATCTTCTAAAGCTTTCTCTCTCATCGCCACCTAACCTCTCTTTCAACTACACACTCAATCTCAATCATGATCACCGCTTCATTTCTCTGCTGCCAACATTACGACGTCGCAGCCGCCGGAATATTTTCCGGCCACCTTTCTCCGTTTCGAACTCCTTCGGCACTGAGATTCTCTCACCAGAATCAGCTCTTCTTCAAGACAGAGCACAGAGCAAAGACTCGCCGGTTCTATTCGATGTCACCGGAATGATGTGCGGTGGATGCGTCTCCCGAGTCAAAACCATTCTATCAGCCGACGACCGTGTTGACTCAGTCGTGGTCAACATGTTGTCTGAAACCGCCGCCGTTAAGCTTAAACGGCTCGAGGACGAACCGGCGAGCGTTGCGGAGAGCCTTGCTCGGAGATTGAGCGAGTGTGGGTTTCCGACGAAGAGGAGGGAGTCAGGTTTAGGAGTGGCGGAAAATGTAAGGAAGTGGAAGGAGTTGGTGAAGAAGAAGGAGGAACTTCTCGCTAAGAGTCGTAACCGCGTCGCTTTCGCTTGGACTTTGGTTGCGTTGTGCTGTGGATCGCACGCTTCGCATATTTTTCATTCTTTCGGGATTCACATTGCTCATGGACCGTTTTGGGAATTTCTTCATAATTCATACGTGAAAGGTGGTTTAGCTTTGGGCTCTCTATTAGGACCAGGAAGAGAGTTACTCTTTGATGGCCTAAATGCTTTTAAGAAAGGGTCCCCAAATATGAACTCTCTTGTGGGGTTTGGTTCAGTAGCTGCATTCATCATCAGCTCGATCTCACTACTGAACCCCGAGCTAGCATGGGATGCATCCTTCTTTGATGAACCGgtcatgcttcttggtttcgtgcttctaggacgttctctggaggaaaaggcaaggattcaggcatctagtgatatgaatgaacttcttTCATTAATATCAACTCAGTCAAGACTTGTCATAACTTCATCAGAAGGTACCCCATCTACTGacagtgtgatttgctctgacacaatttgtgtggaagtcccaactgatgatattcgagtgggcgactcggtgttggtgttgcctggagaaactattcctatagatggaagagtcattgcaggaagaagcgttgtggatgaatccatgcttacaggagaatcacttcctgtatttaaggaggaaggcctcacagatggccctttaaggattgaatcttcttcgactggctcgaacacaatgatatccaagattgtacgcatgGTTGAGGATGCTCAATCGCGTGAAGCGCCTGTACAAAGGCTCGCAGATTCAATAGCAGGGCCATTCGTGTTCAGCATAATGACTCTGTCAGCAGCAACATTTGCATTTTGGTACTTTGTTGGATCACATATATTTCCTGATGTTTTGCTCAATGATATTGCTGGCCCGGAAGGAGATCCTCTGCTTCTGAGTTTAAAACTCTCTGTAGATGTCTTGGTTGTTTCTTGTCCTTGTGCATTGGGTCTTGCCACACCAACAGCAATCCTAGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATTAGAGGAGGGGATGTGCTAGAACGCTTGGCCGGTGTAAATTATATCGCTCTAGACAAGACAGGAACCCTCACCAGAGGAAAACCAGTTGTTTCTGCCATAAGCTCTATTCATTATGGAGAGTCGGAAATTCTTCAGATTGCTGCGGCAGTGGAGAAAACTGCATCTCATCCAATAGCAAAAGCTATTATTAATAAAGCTGAGTCATTAGAGTTGGTCCTTCCACTCACAAAAGGGCAGATAGTTGAACCAGGTTTTGGAACTTTGGCAGAAGTAAGCGGCCGTTTGGTTGCAATTGGGTCATTGCATTGGGTCAATGAACGTTTCGTGACAAGAATGAACTCATCTGATTTGATGAATCTGGAACGTACTTTGATGAATCGTTCATCAAATACATCATCTTCAAAGTATTCAAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATATCTGACATTGTGCGTGAAGATGCTGAATCTACTGTAACGAGGCTTAAGAAGAAAGGGATTAAAACGTTCCTCTTATCAGGAGACAGGGAAGAGGCAGTTGCAACGATAGCAGAGACAGTTGGAATTGAAAAAGATTTTGTCAAAGCATCATTGTCTCCACAGCAGAAGTCTGCATTTATTTCAGCTCTGAAAGCTGCTGGACATCATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGCAGCTGATGTTGGGATCGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCAGATGCAGCATCCATTATACTTCTGGGCAACAAAATTTCACAGGTTATTGATGCCATAGACCTAGCACAGACAACAATGGCAAAAGTTTACCAAAATTTGTCTTGGGCAGTAGCTTACAATGTTATTGCCATTCCTATTGCTGCTGGTGTGTTACTTCCCCAATTTGACTTTGCTATGACACCTTCACTTTCAGGAGGACTAATGGCTATGAGCTCCATTTTTGTGGTTAGCAATTCATTGCTTCTAAAGCTTCATGGGTCTCAAACGTCCAGAAAAAGCTCGCTCTAG 2631 0.3938 MATHLLKLSLSSPPNLSFNYTLNLNHDHRFISLLPTLRRRSRRNIFRPPFSVSNSFGTEILSPESALLQDRAQSKDSPVLFDVTGMMCGGCVSRVKTILSADDRVDSVVVNMLSETAAVKLKRLEDEPASVAESLARRLSECGFPTKRRESGLGVAENVRKWKELVKKKEELLAKSRNRVAFAWTLVALCCGSHASHIFHSFGIHIAHGPFWEFLHNSYVKGGLALGSLLGPGRELLFDGLNAFKKGSPNMNSLVGFGSVAAFIISSISLLNPELAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGTPSTDSVICSDTICVEVPTDDIRVGDSVLVLPGETIPIDGRVIAGRSVVDESMLTGESLPVFKEEGLTDGPLRIESSSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVFSIMTLSAATFAFWYFVGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGVNYIALDKTGTLTRGKPVVSAISSIHYGESEILQIAAAVEKTASHPIAKAIINKAESLELVLPLTKGQIVEPGFGTLAEVSGRLVAIGSLHWVNERFVTRMNSSDLMNLERTLMNRSSNTSSSKYSKTVVYVGREGEGIIGAIAISDIVREDAESTVTRLKKKGIKTFLLSGDREEAVATIAETVGIEKDFVKASLSPQQKSAFISALKAAGHHVAMVGDGINDAPSLAAADVGIALQNEAQENAASDAASIILLGNKISQVIDAIDLAQTTMAKVYQNLSWAVAYNVIAIPIAAGVLLPQFDFAMTPSLSGGLMAMSSIFVVSNSLLLKLHGSQTSRKSSL 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02871 876 SUPERFAMILY HMA, heavy metal-associated domain 78 145 IPR036163 GO:0046872
Car05g02871 876 ProSitePatterns E1-E2 ATPases phosphorylation site. 541 547 IPR018303 -
Car05g02871 876 Gene3D - 550 683 IPR023299 GO:0000166
Car05g02871 876 SFLD C1.7: P-type atpase like 522 804 - -
Car05g02871 876 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 251 863 IPR027256 GO:0006812|GO:0016021|GO:0019829
Car05g02871 876 SFLD p-type atpase 522 804 IPR044492 -
Car05g02871 876 ProSiteProfiles Heavy-metal-associated domain profile. 78 148 IPR006121 GO:0046872
Car05g02871 876 SUPERFAMILY HAD-like 537 860 IPR036412 -
Car05g02871 876 Coils Coil 159 179 - -
Car05g02871 876 PANTHER ATP7, ISOFORM B 77 865 - -
Car05g02871 876 SUPERFAMILY Calcium ATPase, transduction domain A 340 422 IPR008250 -
Car05g02871 876 Pfam haloacid dehalogenase-like hydrolase 535 766 - -
Car05g02871 876 Gene3D - 70 151 - -
Car05g02871 876 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 644 844 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car05g02871 876 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 333 566 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car05g02871 876 SUPERFAMILY Calcium ATPase, transmembrane domain M 283 533 IPR023298 -
Car05g02871 876 Pfam Heavy-metal-associated domain 81 144 IPR006121 GO:0046872
Car05g02871 876 Gene3D - 530 803 IPR023214 -
Car05g02871 876 PRINTS P-type cation-transporting ATPase superfamily signature 697 707 - -
Car05g02871 876 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Car05g02871 876 PRINTS P-type cation-transporting ATPase superfamily signature 539 553 - -
Car05g02871 876 PRINTS P-type cation-transporting ATPase superfamily signature 675 686 - -
Car05g02871 876 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Car05g02871 876 Gene3D - 303 426 - -
Car05g02871 876 Pfam E1-E2 ATPase 333 519 - -
Car05g02871 876 CDD HMA 81 145 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02871 Car-Chr5 73653844 73666368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02871 242 864 Primary Pumps ATPases AT1G63440 36.703 2.05e-113 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02871 K17686 - gmx:100127402 1401.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02871 05 73653844 73666368 Car05g02871 05 73653844 73666368 ECH