Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02860 ATGGAAGATATAAGGTTTCAATTCAGTGACCCATATGAAAGACCCATTAGTCCAAGTTTTTTCAATATGAGTAACCCCACACTGGCAGATTTATCCATTAACAATAACAATGGACCCACTGCAATGTCCCACCAAAATCACCATGAAGTATTTCAACAGAGACAGAACAGTAATTACAATGGAGTGCTTCAACAGAGACAGAGTGGTAATTATAATGATCCATTTTCAAATTCACTGTTATCCCAACAAAATCACCATGGAGTAATTCAACAGGGACATGGTAGTAATTTTGATCAATTTCCTACTCCATTATCACACCAACAAAATAACCGTGGTAGTAATAATGATGATCTATTTACCATTATACAACAATCCAAACTAAATCACCATGAAGTACTTCAACAGGGACAGGGTGGtaataacaataataataataataatGAAACATTTTCTCATCCAATGGTTGAAGATCAAAATGTTAACAATAATTTTACCTTTGGAGGGAATAACTTTGAAGTGGGTAGTACATCACAAATTCATGATAATCAAAATCAACCTGCAAATGATATTCCGGTGTTGTTGAACCACGCCGAAGTGCTAGCACTTGATCAATGGCCACCAGCACCACTTCCATATTTTTGCAGTTGTTGTCATGTTCTCAGAGAAATTATTCATGCTAATGGTATTCAATTTGAAAAACTTGAGATTCATGGAAGACTTGGGTTAATTACTCATGCAATTCATCATCAGACACCTGTTAATGGAGACGCTCCAATTTATCAAATGGTTGATTTTTGTCGGAGAAGTCTTGAAGAAATAAAGATTTTTTTGGCGCAATACTGTGTGGAGCGTAATAGAGCAGGGTATTTCATTCTACAAGATCCTATGTCTGCTTATTATGAAACTCTTTGCACTGGTCTGGATTGGATTGAAGATCTTAATATGGAAGATCCTGTTGATGCTAACAATAATAACAATCAAAATAATTCAGATGAGATTGTGGAGCCACAAGAGCAAGAGGGTGAGAATGGAACGCCTACTAAAAAGAATCTCTCAGTACAGAGGAAGAAAGCAGGAAAACTTACATTGAATGATTTATGCGATCTTTTTCATCTACCTATTGAGGAAGCATCGGAATGTGTGAAGTTATGTCCGACAGTTGTCAAGAAAACTTGTCGTAAAGCAGGATTAGCGCGATGGCCTTACAGAAAGGTCAAAAGCATTTTGAAACAGATAGAATTACTGGGAAGTCAATTGCATACACAAGATCCGGCCACAAGGGCGAGGACTCAAGAGGAGATTAACAGGCTTAAACATGAAATGATTCAGCATTGTGGTGGACAAATACcaacagcaatgtataacattcctcccctgcagcagcagcaacatcagcagcagtaG 1404 0.3533 MEDIRFQFSDPYERPISPSFFNMSNPTLADLSINNNNGPTAMSHQNHHEVFQQRQNSNYNGVLQQRQSGNYNDPFSNSLLSQQNHHGVIQQGHGSNFDQFPTPLSHQQNNRGSNNDDLFTIIQQSKLNHHEVLQQGQGGNNNNNNNNETFSHPMVEDQNVNNNFTFGGNNFEVGSTSQIHDNQNQPANDIPVLLNHAEVLALDQWPPAPLPYFCSCCHVLREIIHANGIQFEKLEIHGRLGLITHAIHHQTPVNGDAPIYQMVDFCRRSLEEIKIFLAQYCVERNRAGYFILQDPMSAYYETLCTGLDWIEDLNMEDPVDANNNNNQNNSDEIVEPQEQEGENGTPTKKNLSVQRKKAGKLTLNDLCDLFHLPIEEASECVKLCPTVVKKTCRKAGLARWPYRKVKSILKQIELLGSQLHTQDPATRARTQEEINRLKHEMIQHCGGQIPTAMYNIPPLQQQQHQQQ 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02860 467 MobiDBLite consensus disorder prediction 318 354 - -
Car05g02860 467 PANTHER PROTEIN RKD4 99 446 IPR044607 GO:0003700
Car05g02860 467 PANTHER RWP-RK DOMAIN PROTEIN 99 446 - -
Car05g02860 467 ProSiteProfiles RWP-RK domain profile. 343 428 IPR003035 -
Car05g02860 467 MobiDBLite consensus disorder prediction 318 352 - -
Car05g02860 467 Pfam RWP-RK domain 361 408 IPR003035 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02860 311 408 AtRKD Transcription Factor Family AT4G35590 32.692 2.15e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Car05g02860 RWP-RK 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02860 - - cam:101503746 920.228