LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g02848	ATGGAGGATCTCGAGGAGGAAGAGAATGGAGAAGAAGAGGTGCTAGGTTCAAGCTTGACTATGGAGAAGGTAGCAGCTGCTAAGAAATTCATTGAGAATCATTATAGGGCTCAGATGAAGAACATCCAAGATCGAAAAGAGAGGCGTTGGATTTTGGAAAGAAAATTAGCTTCTTCGGATGTGCCATCTGAAGAACGGCTCAACCTCATCAAAGATTTAGAGAGGAAGGAAACTGAGTATATGCGATTGAAAAGGAACAAGATTTGTGTAAATGATTTTGAGCTCTTGACCATCATTGGAAGGGGGGCTTTTGGGGAGGTCAGACTGTGTCGGGAGAAGAAATCTGGAAACATTTATGCCATGAAAAAACTGAAGAAATCTGAAATGCTCAGGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCCGAAGTTGCTAGTCATTGCATTGTAAAACTTTATTACTCATTTCAGGATACTGAGTACTTGTATTTAATTATGGAGTATCTACCTGGGGGTGACATTATGACTCTGTTGATGAGGGAAGACACCTTAAGTGAGAATGTGGCTAGATTTTACATGGCACAGAGTGTTCTGGCCATAGAGTCAATTCATAAGCACCATTACATTCACAGAGATATTAAACCCGATAACTTACTTCTGGATAAAAATGGTCACATGAAGCTCTCTGATTTTGGCCTCTGTAAGCCTATCGATTGCATTACCTTGTCGACACTGCATGAAAATCAGACCATGGATGATGAAAATTTGGCAGAGCCAATGGATATCGATAGCTGTTTTCGTGATGCGGACAATCGGAAAAGCTGGAGAAGTCCGCGTGAACAGCTTCAGCATTGGCAGATGAACAGGAGAAAGTTGGCATTTTCAACAGTGGGGACACCAGATTACATTGCTCCTGAAGTACTTTTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTACGAAATGCTGGTTGGTTACCCTCCATTTTACTCTGATGACCCAATAACCACATGCAGAAAGATTGTTCATTGGAGAAACCATTTGAGATTTCCAGAAGATCCCCAGTTAACGCTTGAGGCTAAGGATCTAATCTACAGATTACTGTGTGATGTCGATCATAGGTTAGGTACTCGAGGGGCACAAGAAATCAAGGCTCATCCATGGTTCAAGGGCGTAGAGTGGGATAAACTATATGAAATGGAGGCAGCATTTAAACCACAAGTCAATGGGGAACTGGATACCCAAAATTTCATGAAGTTTGATGAGGTTGAACCGCCAGAAGCAGCAAGAACTGGGTCTGGATCCTCAAGAAAGATGCTTCTAACTCCCAAAGATCTAAACTTTGTTGGTTACACTTACAAAAACTTTGATGCTGTAAAAGAAGGGCTTCGTCAGTCTTTTGATGAGGCCATGCAAGATTATGCTTCCAAACGGACAGCTGATGAAACAAGTTTGCAAATGCTCGCGTCATCGGGAGATCCCATGTTACCATAA	1527	0.4231	MEDLEEEENGEEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQDRKERRWILERKLASSDVPSEERLNLIKDLERKETEYMRLKRNKICVNDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASHCIVKLYYSFQDTEYLYLIMEYLPGGDIMTLLMREDTLSENVARFYMAQSVLAIESIHKHHYIHRDIKPDNLLLDKNGHMKLSDFGLCKPIDCITLSTLHENQTMDDENLAEPMDIDSCFRDADNRKSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDPQLTLEAKDLIYRLLCDVDHRLGTRGAQEIKAHPWFKGVEWDKLYEMEAAFKPQVNGELDTQNFMKFDEVEPPEAARTGSGSSRKMLLTPKDLNFVGYTYKNFDAVKEGLRQSFDEAMQDYASKRTADETSLQMLASSGDPMLP	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g02848	508	ProSitePatterns	Protein kinases ATP-binding region signature.	99	122	IPR017441	GO:0005524
	Car05g02848	508	PANTHER	SERINE/THREONINE-PROTEIN KINASE	13	489	-	-
	Car05g02848	508	SUPERFAMILY	Protein kinase-like (PK-like)	76	446	IPR011009	-
	Car05g02848	508	Gene3D	Phosphorylase Kinase; domain 1	72	176	-	-
	Car05g02848	508	PANTHER	AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN	13	489	-	-
	Car05g02848	508	CDD	STKc_NDR_like	91	465	-	-
	Car05g02848	508	ProSiteProfiles	AGC-kinase C-terminal domain profile.	401	474	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Car05g02848	508	SMART	pkinase_C_6	401	466	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Car05g02848	508	SMART	serkin_6	93	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car05g02848	508	Gene3D	Transferase(Phosphotransferase) domain 1	177	241	-	-
	Car05g02848	508	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	212	224	IPR008271	GO:0004672\|GO:0006468
	Car05g02848	508	Gene3D	Phosphorylase Kinase; domain 1	419	429	-	-
	Car05g02848	508	ProSiteProfiles	Protein kinase domain profile.	93	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car05g02848	508	Pfam	Protein kinase C terminal domain	419	464	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Car05g02848	508	Gene3D	Transferase(Phosphotransferase) domain 1	295	418	-	-
	Car05g02848	508	Coils	Coil	66	86	-	-
	Car05g02848	508	Pfam	Protein kinase domain	94	241	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car05g02848	508	Pfam	Protein kinase domain	292	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g02848	Car-Chr5	73522433	73531600	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g02848	1	507	AGC Kinase Gene Family	AT4G33080	79.764	0.0	844

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Car05g02848		Pkinase	3.4e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g02848	K08790		-	gmx:100815717	951.429

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car05g02848	05	73522433	73531600	Car05g02848	05	73522433	73531600	ECH