Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02841 ATGAAGGGAATTACAGTCAAAGAGGAAGAAACATTAACATATACAAATGTTGGTTCAACATCGTGTTCCTCTTCTTCATCTTCGAGTTCAACCCTTATTCCTAAAccaatggaagggttacacgatgtgggacctcctccatttctcaccaaaacatttgatgttgttgaagatccttccaccgattcaattgtttcatggagcatagctcgtaatagcttcgttgtttgggatcttcataaattctccaccaacattttacctcgttacttcaaacatagcaatttttcaagcttcgttcgacaactcaacacctatGGATTTAGAAAAGTTGATCCTGATAGATGGGAATTTGCAAATGAAGGGTTTTTAGCAGGACAGAGGAATTTGTTGAAAACAATAAAGAGAAGAAGAAATGTAACACAGTCACATGTTATGCAACAAGAAACTGGTGGAGGTGCTTGTGTTGAATTAGGAGAGTATGGTCTTGAAGGTGAGATTGAAAGGTTGAGAAGAGACAGGACTTTGTTAATGGCAGAAATTATGAAGTTGAGACAACAACAGCATAATTCAAGGGATCAATTATCTGATATGGAAACTAGATTGTTGAACACTGAGAAAAAACATCAACAGATGATGAATTTCCTTGCAAGAGCACTCAGTAATCAATCTTTTATACAACAATTGGCTAACAACAAAGAGTTGAAAGGCGTTGAAACAAAGCGAAAGAGGAGGCTCACTGCCAGCTCAAGTTTGGAGAATTTGCATAATGATTCTGTGGTGGATTATTGTAGTCAAGAACAACAAGAAGGGTTGACAACAATTGAGTCTGAGATAGAAAATTTGTTAACTGCTTATGATAATGAGTCAAGCAGTGAAATTAAAGAGTACCCAACTTTGAGTTCAGTTGCAAATGCTAGTGATGATACTGTGTGGGAGGATTTATTGAACCAAGAGTTGGTTGCTGGAAATCCAGACGATGAAGTTGTGATCGGTGATTTGTCTCAAATTAATGTGCCTTTGGAGGATTTGGAAGAAAAGAAGGATGATGATTGGACTGTGGATTTACAGAACCTTGTTGATCAAATGGATTTTCAACCTTAA 1104 0.2971 MKGITVKEEETLTYTNVGSTSCSSSSSSSSTLIPKPMEGLHDVGPPPFLTKTFDVVEDPSTDSIVSWSIARNSFVVWDLHKFSTNILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLKTIKRRRNVTQSHVMQQETGGGACVELGEYGLEGEIERLRRDRTLLMAEIMKLRQQQHNSRDQLSDMETRLLNTEKKHQQMMNFLARALSNQSFIQQLANNKELKGVETKRKRRLTASSSLENLHNDSVVDYCSQEQQEGLTTIESEIENLLTAYDNESSSEIKEYPTLSSVANASDDTVWEDLLNQELVAGNPDDEVVIGDLSQINVPLEDLEEKKDDDWTVDLQNLVDQMDFQP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02841 367 SUPERFAMILY "Winged helix" DNA-binding domain 44 137 IPR036390 -
Car05g02841 367 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 320 IPR027725 -
Car05g02841 367 ProSitePatterns HSF-type DNA-binding domain signature. 87 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g02841 367 Coils Coil 167 201 - -
Car05g02841 367 Pfam HSF-type DNA-binding 48 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g02841 367 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Car05g02841 367 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 20 320 - -
Car05g02841 367 PRINTS Heat shock factor (HSF) domain signature 48 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g02841 367 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g02841 367 PRINTS Heat shock factor (HSF) domain signature 99 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g02841 367 Gene3D - 41 138 IPR036388 -
Car05g02841 367 SMART hsfneu3 44 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02841 Car-Chr5 73457695 73459999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02841 34 365 HSF AT2G26150 51.020 1.81e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car05g02841 HSF_DNA-bind 4.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02841 K09419 - gmx:100794605 446.817