Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02832 ATGAGAATAGCTAGGAAATGTTCATATTGTGGAACCTTGGGTCATAATTCAAGGACTTGCAATAATAGTATGAGTCACAAACAACTTGATTTTTATTCTTCTTCAACTTCATATTTGGGCACTAAAAGGAGTTTCAACATGGATTCAATGCTATCGTCACAAACCTCTTTAGCAATATCCTCCTCCTTGCCTACCCTGTTTGGTGCAAATGAAAATTCAGATAAATATTTAGGCAGTTGCGTCATATCAACAATCCGAGATGGTAAAAAAGGTATGGCATGGACTGAAGAGGAGAACAAGTTATTTGTTAGAGGACTTGAGAAGCTTGGGAAGGGTAAATGGAGAGATATATCTAAAGAATTTGTGACAACAAAAACACCAACCCAGGTGGCAAGTCATGCACAGAAATATTTTCTCCGTTTGTATCAAAATAGCTTCTTGCTCAACAGAACAAACCACCCTTCCAGCCTGCTCAATGTGGAGTGTGAAGCTAGATTTAAAGCATTTTCTGAACCAAGTGAAGCTTTTCTTTGTTATCCTCATTCAGTGCTGAAATGGTCTAGTTCTTCATCATCGACAAACTGTACTTCTCAGAATGAAGTACTTGATTTAGAACTCAGACTTGGAACTCCCACGCCTTTAGCTAGTTAA 651 0.381 MRIARKCSYCGTLGHNSRTCNNSMSHKQLDFYSSSTSYLGTKRSFNMDSMLSSQTSLAISSSLPTLFGANENSDKYLGSCVISTIRDGKKGMAWTEEENKLFVRGLEKLGKGKWRDISKEFVTTKTPTQVASHAQKYFLRLYQNSFLLNRTNHPSSLLNVECEARFKAFSEPSEAFLCYPHSVLKWSSSSSSTNCTSQNEVLDLELRLGTPTPLAS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02832 216 ProSiteProfiles SANT domain profile. 89 146 IPR017884 -
Car05g02832 216 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Car05g02832 216 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 160 - -
Car05g02832 216 Pfam Myb-like DNA-binding domain 92 138 IPR001005 -
Car05g02832 216 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Car05g02832 216 Gene3D - 92 143 - -
Car05g02832 216 PANTHER TRANSCRIPTION FACTOR KUA1 4 160 - -
Car05g02832 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Car05g02832 216 CDD SANT 93 138 IPR001005 -
Car05g02832 216 SMART sant 90 140 IPR001005 -
Car05g02832 216 SUPERFAMILY Homeodomain-like 89 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02832 Car-Chr5 73385877 73386899 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car05g02832 Myb_DNA-binding 3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02832 - - mtr:MTR_3g104370 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02832 05 73385877 73386899 Car05g02832 05 73385877 73386899 ECH