Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02826 ATGGTACCTTGGTTGGAACCCCAAATCGAAGAAGAAGAAGAAACAACCGAAGCAAAATGGAGCACAAGAAGTAATGGCAATAATAATGGTGATGAACATCTGACTTCGTTGAATTCAATTTTGGAAGCTGAGTGGTACATGAACAACATCCCACCTCATAGTGTAGAACTTGTCCCAAATCTTCAAAGCCAACAACAAATTACCATTCCTTCTCATTCAGATCCAATGAGAATAAGTTCCTCCTCCTTCTTGCCCAATGAGAATATGAACAATCCTTTTGGCAATGTATTTGATTTTGAATCCAAAGGGGATTTTGTTGCTCCATTAATTCAAGGGAACCAAATGGACGTCTCAGCCCAAACTAGCCCCTTACCTGACTTCCCAACGCCCACTGTAGTTGGGTTTGGTCCAACCGGTTTAGATAGGTTGCAACCACTGCCAATTTCGCGATTCACCTCCACATGGTTGAAGGAGTTTGATAAAAaCTTAAAGGGGAAGAAGAAAGAAATTCCGGCAAAGAGTTTAATGGCTGAGAGGCGGCGAAGGAAGAAACTGAGTGATAGATTGTACATGCTTCGCTCTATTGTGCCCAAGATTACCAAGATGGATAGAGCTTCAATACTTGGCGATGCAATTGATTACATGAAAGAGTTACTACAAAGGATTAATGATCTTCATAGTGAGCTAGAATCTAGCTCTCTTGGATCAACTTTCCCACCTTCTACAACCTTTCACACTATGATACCCACCACCTCAACCCTTCCTTCTATGGTGAAGGAAGAACGATGTCCTAGCAATGTGTCAATCCCTAACAACCAATCACCAAAGATAGAGGTTAGAGTAAGGGAAGGGAAAAGTTTCAGCATCCATATGTATTGCCCCCAAAGACCAGGTGTTTTGCTTTCTACCATGAGGGCACTGGATAGCCTTGGATTGGAGGTTCAACAAGCTGTTATTAACTCTTTCAATGGTTTTACTTTAGATGTGTTCAAAGCTGAGCAATGCAAAGAAGGTCATGATGTGCTCCCCGAGCAAATTAAAGCTGTATTGTTGGATACATTGAGTTTCCATGGCATGATGTGA 1083 0.4174 MVPWLEPQIEEEEETTEAKWSTRSNGNNNGDEHLTSLNSILEAEWYMNNIPPHSVELVPNLQSQQQITIPSHSDPMRISSSSFLPNENMNNPFGNVFDFESKGDFVAPLIQGNQMDVSAQTSPLPDFPTPTVVGFGPTGLDRLQPLPISRFTSTWLKEFDKNLKGKKKEIPAKSLMAERRRRKKLSDRLYMLRSIVPKITKMDRASILGDAIDYMKELLQRINDLHSELESSSLGSTFPPSTTFHTMIPTTSTLPSMVKEERCPSNVSIPNNQSPKIEVRVREGKSFSIHMYCPQRPGVLLSTMRALDSLGLEVQQAVINSFNGFTLDVFKAEQCKEGHDVLPEQIKAVLLDTLSFHGMM 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02826 360 PANTHER BHLH TRANSCRIPTIONAL FACTOR 159 360 - -
Car05g02826 360 Pfam Helix-loop-helix DNA-binding domain 176 218 IPR011598 GO:0046983
Car05g02826 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 238 IPR036638 GO:0046983
Car05g02826 360 MobiDBLite consensus disorder prediction 1 31 - -
Car05g02826 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Car05g02826 360 CDD bHLH_AtAMS_like 172 226 - -
Car05g02826 360 ProSiteProfiles ACT domain profile. 288 360 IPR002912 -
Car05g02826 360 Gene3D - 161 233 IPR036638 GO:0046983
Car05g02826 360 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 159 360 - -
Car05g02826 360 SMART finulus 175 224 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02826 Car-Chr5 73337621 73341430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02826 170 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 68.902 1.26e-76 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g02826 HLH 7.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02826 - - cam:101515675 676.011