Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02819 ATGGGTTTTGATATCTCTCTTGGTCTTGGTCTAGGCCTCCATGAACAAAGCCATAAGAAAAAGGATGATGATCCATTTAATAAGGCAAACCCAATAATATCTCTTACGTTAGGAGTAGGAGGATCCCCTTCACATGCTTCTTCTACATGCAGTTTGCAACTCTCTTCATTTTCCAATTCTTCCACAAATATTAGCATCAAGAGGGAGAGAGACAGCGAAGAATTAACACATGTGCCTGCAGCATATGTAGAGAATAATAATATTAATCCATCAAAGGTTCTTGTTGATGATGTTGATGAAAATGGTAACACCAACAGGAAGAAACTTAGGCTCACTAAACAACAATCCCAATTGTTGGAAGAGACCTTCAAAGATCATTCTACTCTCAATCCGAAGGAAAAGCAAGAATTGGCAAGGAAGCTGAATCTTCGGACCAGACAAGTAGAGGTGTGGTTTCAGAACAGGAGGGCAAGGACAAAGCTGAAAAAAACGGAAATGGACTGTGAAGAACTGAAAAAATGTTATGAAACACTAACAGAAGAAAACAAGAGGCTGGAAAATGAGTTGAAAGATCTTAAATCGATGAAAACAACAGATGCACCATTTAATCATATGCAGCTTCCGGTAGCCGGTCTTACAATTTGCCCTTCTTGTAACAGAATTTGCACCGGAAGCGGCGGTGATGAGAATAGTAACATTGGACCCTCTCCCACCACCACTTTGCTTCTTAGCCCAAAGCCCCATATTCACTTCTACACAAATAATAGTAATAATTATTCGTTCACCCAATCTTTTGCAACTATTGCTAGCTAG 813 0.3973 MGFDISLGLGLGLHEQSHKKKDDDPFNKANPIISLTLGVGGSPSHASSTCSLQLSSFSNSSTNISIKRERDSEELTHVPAAYVENNNINPSKVLVDDVDENGNTNRKKLRLTKQQSQLLEETFKDHSTLNPKEKQELARKLNLRTRQVEVWFQNRRARTKLKKTEMDCEELKKCYETLTEENKRLENELKDLKSMKTTDAPFNHMQLPVAGLTICPSCNRICTGSGGDENSNIGPSPTTTLLLSPKPHIHFYTNNSNNYSFTQSFATIAS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02819 270 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981|GO:0006355
Car05g02819 270 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 41 - -
Car05g02819 270 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 47 270 - -
Car05g02819 270 CDD homeodomain 106 163 IPR001356 GO:0003677
Car05g02819 270 PANTHER - 47 270 - -
Car05g02819 270 PANTHER - 5 41 - -
Car05g02819 270 CDD bZIP 155 194 - -
Car05g02819 270 Pfam Homeodomain 106 160 IPR001356 GO:0003677
Car05g02819 270 SMART HOX_1 104 166 IPR001356 GO:0003677
Car05g02819 270 SUPERFAMILY Homeodomain-like 103 170 IPR009057 -
Car05g02819 270 Coils Coil 154 198 - -
Car05g02819 270 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677
Car05g02819 270 Pfam Homeobox associated leucine zipper 162 196 IPR003106 GO:0006355|GO:0043565
Car05g02819 270 Gene3D - 99 170 - -
Car05g02819 270 SMART halz 162 205 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02819 Car-Chr5 73270026 73272258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02819 1 221 Homeobox Transcription Factor Family AT4G37790 48.560 1.59e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car05g02819 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02819 K09338 - gmx:100790927 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02819 05 73270026 73272258 Car05g02819 05 73270026 73272258 ECH