Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02812 ATGAATTTGAAGATGGATTCTGATAAAGCAAAGCTGTTCATCGGTGGAATTTCTCGAGACACCACTGAAGACATTCTCAAAAACCACTTCACCAAGTACGGTGATGTTTTGTATTCCACAGTCTCTTTAGACCGTACCACCCGAATCCCTAGAGGTTTTGGCTTCGTTACTTTCTCCGATATCTCTTCAGCTCATGAAGCCCTTCAAGACACTCACGTTATTCTTGGAAGAACGGTAGAAGTGAAAAAAGCAATACCAAGAGGTGAACAGCAACACCAAAATCAATTACAGAATAGAGGGGGAAATAACTATAATAATTATGAATGTAGCAATGATCACATTAGGACTAAAAAGATTTTTGTAGGAGGTTTACCTGCTAATATATCTGAGGTGGAGTTTAAGAGATACTTTGAGAGGTTTGGTCGAATAACTGATGTGGTGGTGATGCAGGATAGTGTAACTCACAGGCCGAGGGGGTTTGGGTTCATAACTTTCGATTCTGAAGAGTCTGTGCAAAATGTTATGGTGAAAACTTTTCACGACTTGAATGGTAGTAAGGTTGAGGTTAAGAGGGCTGTTCCGAGGGAGGAAAACGCTGGTTATGATGGTTTTAATAAAATAAGATATAATAGTGATAGAGGAGCTGCTGAAACTTTTCCTCATTCTAGTCCTAGCAACATGTTTCCTGGATTTGCTCCTTCTCCATTACCTTGGTATGGTAATGATGGAGTATATGGATATGGATCAACAAATGCGTATGGTTGCTGGTACCCTATGGGTGGTTATGCGGGGAATGTATATGTAGCTCCATCAGATATTTCTAGGAACTTTTGGTATGGGCAAATGGTACCTGCTCCTCAGGTATGTCAGGTGCCTTACTTTAATACGAATGTTGCATATATGGGCAGCAGCGTTGGAATTGTAGGTAGTGCTGCCGGAAGTTGGGGGTACCATTCCATTCCTGTGTCTGCAACAAATTTAAAATTTGACCACCCTTTTACTGCCAATGGGTTTGTTCAATATAATTTGCCGTCACCTCATGTGGTAAAGCAGGGTGTTGGTACTTCAATTCATGTAGGAATTAATGGTGGAGTTTCTAGTTGA 1104 0.4085 MNLKMDSDKAKLFIGGISRDTTEDILKNHFTKYGDVLYSTVSLDRTTRIPRGFGFVTFSDISSAHEALQDTHVILGRTVEVKKAIPRGEQQHQNQLQNRGGNNYNNYECSNDHIRTKKIFVGGLPANISEVEFKRYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKTFHDLNGSKVEVKRAVPREENAGYDGFNKIRYNSDRGAAETFPHSSPSNMFPGFAPSPLPWYGNDGVYGYGSTNAYGCWYPMGGYAGNVYVAPSDISRNFWYGQMVPAPQVCQVPYFNTNVAYMGSSVGIVGSAAGSWGYHSIPVSATNLKFDHPFTANGFVQYNLPSPHVVKQGVGTSIHVGINGGVSS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02812 367 Gene3D - 114 202 IPR012677 -
Car05g02812 367 SMART rrm1_1 118 190 IPR000504 GO:0003723
Car05g02812 367 SMART rrm1_1 11 82 IPR000504 GO:0003723
Car05g02812 367 SUPERFAMILY RNA-binding domain, RBD 112 205 IPR035979 GO:0003676
Car05g02812 367 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 350 - -
Car05g02812 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Car05g02812 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Car05g02812 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Car05g02812 367 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 350 - -
Car05g02812 367 SUPERFAMILY RNA-binding domain, RBD 6 108 IPR035979 GO:0003676
Car05g02812 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Car05g02812 367 Gene3D - 2 112 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02812 Car-Chr5 73154004 73156629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02812 12 190 Eukaryotic Initiation Factors Gene Family AT4G34110 26.667 9.72e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02812 K14411 - gmx:100816822 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02812 05 73154004 73156629 Car05g02812 05 73154004 73156629 ECH