Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02789 ATGGAAAACTTTGGAACTTTCCCTGATGGTGAATGGGAATGCTGTCGTAGAATGTTTGCCATTGAAGACCATGATGACTCATCACTTCTGCTAGGGGAAGATGATGGGAACTTTGGAGTACAATCCATGTTTTACTCTTCTAATTCTCACAACAACAATAATTTGAAGTATATGTCACAAGAAAATAATCATAGTCTGGCTGACACAAACTACTTTTTTAATTGTTTTGATCATGTGGTAGCTAATAATAGTGACATATCAGAGAATTTTGATCATGGTGATCAAGTCCAACCAATTGTTTTTCCCACCAAGCAGTTGAAGCTCAAAAGGTTGCTTGGTGTGTCAGAACTTGAAGATAAGATACACTCATGTGTGAATCCTAAGAAAAAACCTCGTACTTCAAAAGATGTGCAAAGATGCATGAAGAAGGCAGAGTACTCCAAGAAGAGCAAGAAGATTGATAGAAATGGGAACAAGGCAGAAGAAACCAATGCAAGTATAGATGGACATAGCTCTAGTGGTTATACCTCAGAGGAGCACAATGTGTATGAGGAAAATAGTGGAAGAGTTACTTCAGCATCTAAATTAACTGTGGCTCTCAACTCAAATGGGAAGATAAGAGCTAATAGAGGATCAGCAACAGATCCTCAAAGCCTTTATGCAAGGAAAAGAAGAGAGAGAATAAACGAGAGACTAAAAACTCTACAAAATCTTGTACCAAATGGAACCAAGGTTGATATAAGCACAATGCTTGAAGAAGCGGTCAATTATGTGAAACTTTTGCAACTCCAAATCAAGCTTCTAAGCTCTGATGAATTGTGGATGTACGCCCCAATTGCCTATAATGGACTTGACATTGGAATCAATCTTAGCCAGAAGATTTATCCACCACCATGA 897 0.3813 MENFGTFPDGEWECCRRMFAIEDHDDSSLLLGEDDGNFGVQSMFYSSNSHNNNNLKYMSQENNHSLADTNYFFNCFDHVVANNSDISENFDHGDQVQPIVFPTKQLKLKRLLGVSELEDKIHSCVNPKKKPRTSKDVQRCMKKAEYSKKSKKIDRNGNKAEETNASIDGHSSSGYTSEEHNVYEENSGRVTSASKLTVALNSNGKIRANRGSATDPQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVNYVKLLQLQIKLLSSDELWMYAPIAYNGLDIGINLSQKIYPPP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02789 298 SMART finulus 218 267 IPR011598 GO:0046983
Car05g02789 298 PANTHER TRANSCRIPTION FACTOR BHLH54 41 292 - -
Car05g02789 298 Gene3D - 214 270 IPR036638 GO:0046983
Car05g02789 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 261 IPR011598 GO:0046983
Car05g02789 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 277 IPR036638 GO:0046983
Car05g02789 298 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 41 292 - -
Car05g02789 298 MobiDBLite consensus disorder prediction 162 188 - -
Car05g02789 298 CDD bHLH_AtIND_like 213 275 - -
Car05g02789 298 MobiDBLite consensus disorder prediction 145 188 - -
Car05g02789 298 MobiDBLite consensus disorder prediction 145 161 - -
Car05g02789 298 Pfam Helix-loop-helix DNA-binding domain 222 262 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02789 Car-Chr5 72951673 72953247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02789 176 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 74.138 1.11e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g02789 HLH 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02789 - - cam:101510280 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02789 05 72951673 72953247 Car05g02789 05 72951673 72953247 ECH