Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02773 ATGCTCTTGAATTCTTCAAGTTATTATTATCTGCATTACATAAACCGCCATCTCTTCCTTTCTTTCTCAGCTCTTCATCACGTCACCTTCTATAAATGCCTAAAACAAACAAAATTCAATCACCTAAATTTCTTCCTCATTTCCTTGTTTTCTTCTATTCTCGCCACCTATGTTTCCAAATTCATTTCACTCATGCCTCATGAAGTGAATGGAAAGATGGGGAGAGTGAAGCTTCAAATCAAAAAGATTGAGAACACAACAAATAGGCAAGTCACTTTCTCAAAGAGGAGGAATGGGTTAATCAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGTTGATGTTGCTCTCATCATGTTTTCTCCTTCTGGGAGAGCCACTCTTTTCTCCGGCAATAGAAGCATTGAAGAAATTATAGAACGATATATAAATCTTCCAGATATTGAACGTGGAAGGATGCATAATCAAGAGCACATTCGAAAGTTTCTTAGTAAGTTGAAAGTCGAAACCGAACAAATTTGCCAACCTCCTAGTCCAGTGATTACAGATTCCCAACTCAAGGAGATTCAAAGAGAAATTTTTATTTGCAAATCTCAATTGGAAGAGATGGAGAATCGGCTAAGGATATTTGAAGGTGATCCTTCTGAGATCACCACATTGTGCGAGGCTGAATATCGTGAACAAGTCCTTCAGGAAACTCTAAAACAAGTGCAACTGCGGAAATGCATTTTGGAGGAAGAACATATTTCTCATGCATCTCCACAGGTACATCTTACAAAAACTGTAGATGGGTTTGTTGCTGGAACTATAGAGAATGCATTAGCCTGGTTTCCACAGGAAGATACCAATAATCAGATTCTAAACTTTGCAAATGTTTATGACCCTTCTCCTCTCAGTGATCAACAATCACTAAGTACTATTGCTGATATGGTAACGCCAGCATCAACTCGTTTGCACTCTACATTCATGGATCACAATTGTCAACTAAGTCCGAGAGATGTTGCAGAAGCTGACATAAATAATACAATAAGTCCTCAGTTCGGACATGTTATGGACATTAATTCATCCTCTTGGGAACACCTCCATCATTTAGAAAGTGGAGCATTGTCCGTTGCAGAGACAGGAGAAGGTCCCTATGTGCAACTTCAAACATGA 1155 0.3853 MLLNSSSYYYLHYINRHLFLSFSALHHVTFYKCLKQTKFNHLNFFLISLFSSILATYVSKFISLMPHEVNGKMGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRATLFSGNRSIEEIIERYINLPDIERGRMHNQEHIRKFLSKLKVETEQICQPPSPVITDSQLKEIQREIFICKSQLEEMENRLRIFEGDPSEITTLCEAEYREQVLQETLKQVQLRKCILEEEHISHASPQVHLTKTVDGFVAGTIENALAWFPQEDTNNQILNFANVYDPSPLSDQQSLSTIADMVTPASTRLHSTFMDHNCQLSPRDVAEADINNTISPQFGHVMDINSSSWEHLHHLESGALSVAETGEGPYVQLQT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02773 384 PANTHER SERUM RESPONSE FACTOR HOMOLOG 73 367 - -
Car05g02773 384 Coils Coil 186 206 - -
Car05g02773 384 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 82 127 IPR002100 GO:0003677|GO:0046983
Car05g02773 384 PRINTS MADS domain signature 75 95 IPR002100 GO:0003677|GO:0046983
Car05g02773 384 PRINTS MADS domain signature 95 110 IPR002100 GO:0003677|GO:0046983
Car05g02773 384 PRINTS MADS domain signature 110 131 IPR002100 GO:0003677|GO:0046983
Car05g02773 384 SUPERFAMILY SRF-like 74 154 IPR036879 GO:0003677|GO:0046983
Car05g02773 384 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 ISOFORM X1 73 367 - -
Car05g02773 384 SMART madsneu2 73 132 IPR002100 GO:0003677|GO:0046983
Car05g02773 384 Gene3D - 85 166 IPR036879 GO:0003677|GO:0046983
Car05g02773 384 ProSiteProfiles MADS-box domain profile. 73 133 IPR002100 GO:0003677|GO:0046983
Car05g02773 384 CDD MADS_MEF2_like 74 147 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02773 Car-Chr5 72845853 72849448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02773 73 301 Type I MADS-box Gene Family AT1G22130 42.739 3.68e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car05g02773 SRF-TF 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02773 - - cam:101506754 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02773 05 72845853 72849448 Car05g02773 05 72845853 72849448 ECH