Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02757 ATGGCGCAAATTCACGAGAGTCCAATCAATGACGCGGCGGCTCCGGTTCCGAGTCATTTGGCGACGACGTCGTTGTACGTCGGAGATCTTGATCTCGACGTCAATGATTCGCAGATTTACGATCTTTTCAACCAGATCGGCCAAGTTGTTTCTGTTAGGGTTTGCAGGGACTTGGCTTCTCAACAATCCCTAGGTTACGGTTACGTCAATTTCAGTAACCCTAATGACGCTGCGAAAGCTATTGACGTGCTGAATTTTACTCCACTGAACAACAAACCGATTAGGATAATtgtctgtttgatccctgtagagactctacttaatgggataaggcttggttattgttgtTGTATTAATTTGGATAAGGCAATCGATCACAAAGCTTTATATGATACTTTTTCGGTTTTTGGAAATATTCTTTCCTGCAAGATAGCAATGGATGCTTCTGGTCTGTCTAAGGGCTATGGTTTTGTGCAATTTGAGAATGAAGAATCTGCCGAAAGTGCAATTGACAAGTTAAATGGAATGCTGATTAATGATAAACCGGTCTATGTTGGTCATTTCCAAAGAAAGCAGGATAGAGAGAATGCTTTGAGTACTGCTGCGAAGTTTAATAATGTCTATGTGAAAAACCTATCAGAGGCTATGGCGGATGATGACTTGAAGAAAATATTTGGAGAGTATGGAACTATTACTAGTGCTGTAGTAATGAGAGATGTAGATGGTAAATCGAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAAGCCGTGGAGGCACTTAATGGAAAGAAATTTGATGACAAGGAGTGGTATGTTGGAAAAGCCCTAAAGAAATATGAAAGGGAACTTGAACTGAAAGAAAGACATGACCAGAGTATGAAGGAAACTGTGGACAAATATTATGGTGCAAACTTGTATGTCAAAAACTTGGACGACAGTGTTAGTGATGAAAAACTCAGTGAACTGTTCTCTGAGTTTGGTACAGTAACTTCATGCAAGATTATGCGAGATCCACAGGGAATTAGTAGGGGATCTGGATTTGTTGCCTTTTCAACTCCTGAGGAAGCAACTCGAGCTCTTGCTGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTCTACGTTGCTCTTGCACAGAAAAAGGAAGAGAGAAAAGCAAGGTTACAGGCACAATTTTCTCAAGTGAGACCAGTTGCAATGGGTCCTATTGCACCTCGAATGCCATTTTACCCTGCAAATGTTCCTGGAATGGGACAACAAATAATGTATGGTCAAGCTCCTCCTGCCTTCATATCTCAGGCTGGATTTGGCTACCCGCAGCAACTGGTTCCTGGAATGAGACCAGGTGCTCCTTTGCCAAACTTCTTTGTTCCCATGGATCAGCAGGGGCAACAAGGTCAGCGTCCAGGTGGACGGCGAGGAGCTGGTCCCATGCAACAACTCCAGCAGACAATGCCATTGATGCAGCAACAGATGCTTCCAAGGGGACGTGTCTATCGATATCCACCTAGTCGCAACATGCAAACTATTACACTACCAGGAGTTGCTGGAGGAGCGCAGGCTCTGGCTACAGCTCTTGCAAATGCTCATCCTGAACAGCAGAGGACTATGCTTGGTGAAGTTTTATACCCGCTAGTAGAGAAGCTTGAGCAAGTTGGGGCTGCAAAGGTGACAGGGATGCTTTTGGAGATGGACCAGCCTGAGGTGTTACATCTGATTGAGTCACCAGAGGCTCTCAAGACAAAAGTTGCTGAAGCCATGGATGTGCTGAGAAGTGTTCAACAGCAGCAATCAAACATCCCATCTGATCAAATGGCTTCTCTCTCTCTTAATGACAGTCTCGAATCTTAG 1866 0.4255 MAQIHESPINDAAAPVPSHLATTSLYVGDLDLDVNDSQIYDLFNQIGQVVSVRVCRDLASQQSLGYGYVNFSNPNDAAKAIDVLNFTPLNNKPIRIIVCLIPVETLLNGIRLGYCCCINLDKAIDHKALYDTFSVFGNILSCKIAMDASGLSKGYGFVQFENEESAESAIDKLNGMLINDKPVYVGHFQRKQDRENALSTAAKFNNVYVKNLSEAMADDDLKKIFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAKAVEALNGKKFDDKEWYVGKALKKYERELELKERHDQSMKETVDKYYGANLYVKNLDDSVSDEKLSELFSEFGTVTSCKIMRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVALAQKKEERKARLQAQFSQVRPVAMGPIAPRMPFYPANVPGMGQQIMYGQAPPAFISQAGFGYPQQLVPGMRPGAPLPNFFVPMDQQGQQGQRPGGRRGAGPMQQLQQTMPLMQQQMLPRGRVYRYPPSRNMQTITLPGVAGGAQALATALANAHPEQQRTMLGEVLYPLVEKLEQVGAAKVTGMLLEMDQPEVLHLIESPEALKTKVAEAMDVLRSVQQQQSNIPSDQMASLSLNDSLES 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02757 621 CDD RRM2_I_PABPs 119 187 IPR045305 -
Car05g02757 621 PANTHER POLYADENYLATE-BINDING PROTEIN 15 523 - -
Car05g02757 621 SUPERFAMILY RNA-binding domain, RBD 307 404 IPR035979 GO:0003676
Car05g02757 621 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 523 600 IPR002004 GO:0003723
Car05g02757 621 PANTHER RNA BINDING PROTEIN 15 523 - -
Car05g02757 621 Gene3D - 116 202 IPR012677 -
Car05g02757 621 Gene3D - 307 405 IPR012677 -
Car05g02757 621 SUPERFAMILY RNA-binding domain, RBD 23 194 IPR035979 GO:0003676
Car05g02757 621 SMART rrm2_1 206 278 IPR003954 GO:0003676
Car05g02757 621 SMART rrm2_1 24 97 IPR003954 GO:0003676
Car05g02757 621 SMART rrm2_1 112 186 IPR003954 GO:0003676
Car05g02757 621 SMART rrm2_1 309 381 IPR003954 GO:0003676
Car05g02757 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 190 IPR000504 GO:0003723
Car05g02757 621 SMART poly_2 535 598 IPR002004 GO:0003723
Car05g02757 621 PANTHER RNA BINDING PROTEIN 526 605 - -
Car05g02757 621 Gene3D - 203 306 IPR012677 -
Car05g02757 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 96 IPR000504 GO:0003723
Car05g02757 621 Coils Coil 281 301 - -
Car05g02757 621 MobiDBLite consensus disorder prediction 599 621 - -
Car05g02757 621 CDD RRM1_I_PABPs 24 96 - -
Car05g02757 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 282 IPR000504 GO:0003723
Car05g02757 621 SMART rrm1_1 309 381 IPR000504 GO:0003723
Car05g02757 621 SMART rrm1_1 114 186 IPR000504 GO:0003723
Car05g02757 621 SMART rrm1_1 24 97 IPR000504 GO:0003723
Car05g02757 621 SMART rrm1_1 206 278 IPR000504 GO:0003723
Car05g02757 621 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 385 IPR000504 GO:0003723
Car05g02757 621 CDD RRM4_I_PABPs 307 385 - -
Car05g02757 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 275 IPR000504 GO:0003723
Car05g02757 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Car05g02757 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 378 IPR000504 GO:0003723
Car05g02757 621 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 183 IPR000504 GO:0003723
Car05g02757 621 Gene3D - 521 602 - -
Car05g02757 621 SUPERFAMILY RNA-binding domain, RBD 204 288 IPR035979 GO:0003676
Car05g02757 621 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 24 596 IPR006515 GO:0003723
Car05g02757 621 SUPERFAMILY PABC (PABP) domain 487 607 IPR036053 GO:0003723
Car05g02757 621 CDD RRM3_I_PABPs 204 283 - -
Car05g02757 621 PANTHER POLYADENYLATE-BINDING PROTEIN 526 605 - -
Car05g02757 621 Gene3D - 4 97 IPR012677 -
Car05g02757 621 Pfam Poly-adenylate binding protein, unique domain 531 595 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02757 Car-Chr5 72646832 72653035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02757 21 619 Eukaryotic Initiation Factors Gene Family AT1G49760 62.063 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02757 K13126 - pvy:116125579 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02757 05 72646832 72653035 Car05g02757 05 72646832 72653035 ECH