Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02753 ATGGCTCTTCTTCTAGACAACTGTGAAGGCATTTTACTCTCTTTAGACTCTCACAAATCGGTTccagctcctttcctcactaaaacataccaacttgttgacgatcccaacacagatcacatagtctcttggggtgaagacgattccaccttcgttgtctggcgtcctcctgagtttgctagagatcttctccctaactactttaaacacaacaacttctccagcttcgttcgccaactcaacacttacGGTTTTAGAAAGATTGTGCCAGACAGATGGGAGTTTGCAAATGAATATTTCAAAAAAGGAGAAAAACATTTACTTTGTGAGATTCATAGAAGAAAAACAACACAACCTCAACAAACATCCATTAACATGAATCACCACCACCACCATTCTCAACTTGGTAATATTCCACCAAGTTTCTTTCCATTTTCCAACACTAGAGTAAGCATTTCACCCCCAAATGACTACTCTGATGAACAAACCAACAATTGGTGTGATTCTCCACCATTAACTTCACCAACATCATTCATTCATGGaacaacaacaaccacaacaaccaactacaacaCTTCTGTTACAGCACTTTCTGAAGACAATGAAAGACTAAGAAGAAGTAACAACATGTTAATGTCAGAGCTAGCACACATGAAGAAACTTTACAATGACATAATCTACTTTGTTCAGAATCATGTTAAACCAGTAACACCAAGCAACTCTTACTCTTCTTCATTTCTACTACCACAAGCTTCAACTCCTACTCCTGTAAATGTTTCTAATGTTTCAATGGTGCAAAGACCAATGAATAATATTTTGGGGTATTATTCAACTTCTACAAATAACCCTAAACATGTCACTCATTTTCAACCTCAAAATCAATCCTATGCAGTCAACTCTCCAACCAACACCAACACATCAAGAAGCTCTATAACAATTGTTGAAGGACATAATAGTAACACTAACAACTGCAAGACTAAACTTTTTGGAGTATCGTTGCAATCCAAGAAAAGGGTGCACCCTGAATGTGGATCTAATATTCCAACTAATTTGGAAACCAACAAGGCTCGTTTGGTTTTGGAAAAAGATGATTTGGGTTTGAATCTTATGCCTCCTTCAACTTGTTAG 1128 0.2926 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPNTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEYFKKGEKHLLCEIHRRKTTQPQQTSINMNHHHHHSQLGNIPPSFFPFSNTRVSISPPNDYSDEQTNNWCDSPPLTSPTSFIHGTTTTTTTNYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVTPSNSYSSSFLLPQASTPTPVNVSNVSMVQRPMNNILGYYSTSTNNPKHVTHFQPQNQSYAVNSPTNTNTSRSSITIVEGHNSNTNNCKTKLFGVSLQSKKRVHPECGSNIPTNLETNKARLVLEKDDLGLNLMPPSTC 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02753 375 Gene3D - 17 116 IPR036388 -
Car05g02753 375 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g02753 375 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g02753 375 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g02753 375 PANTHER BNAC06G00310D PROTEIN 12 374 - -
Car05g02753 375 Coils Coil 194 214 - -
Car05g02753 375 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 374 IPR027725 -
Car05g02753 375 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g02753 375 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Car05g02753 375 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g02753 375 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02753 Car-Chr5 72606543 72608196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02753 1 374 HSF AT1G46264 55.471 4.58e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car05g02753 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02753 K09419 - gmx:100781389 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02753 05 72606543 72608196 Car05g02753 05 72606543 72608196 ECH