Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02752 ATGGACTGTAATAACCACATAAAGCCATCTCTATCTCCAGAGGAACAGAACATCGACATGATGTTAATGATGATGATGCAGCTCCCAGAATTTTCATCTTCATCCAACGGTCACGAATCCGTGGAGCCATTTCCACCGTCAGATCATGAGTACTACAACTCGGCTAATGCTTCCAACAACACACTTCCTCTTGCAGATTTAATCGATAATAACCCTCCTAATCAAACTCCATGGTCTTCATCATTTACCAATTTACCCTTACAAGCAAGCACCACAAACACAATCTCTTTCACTAACAACACCCCATTAATCCTTCAAGAAACCCCCCCAACGTTGTTTTCAAATTATCCGAACGAGGTTGTAACAAACCTTTACGGTACAGTGCCATCAGAGAAACGAAACTCAATGGCGGCGATGAGGGAAATGATATTCAGAATAGCAGCGATGCAACCAATTTACATAGACCCTGAATCAGTGAAAGCACCAAAGAGAAGGAACGTGAAGATTTCAAAGGATCCACAGAGTGTTGCGGCACGACACAGAAGAGAAAGAATAAGTGAAAGGATAAGGATATTGCAGAGAATGGTGCCAGGTGGAACTAAGATGGATACTGCATCAATGTTGGATGAAGCTATTCATTATGTTAAGTTTCTTAAGACACAGGTTCAGTCACTCAAGGAACGTGCTGCTGTTGCTGCAGGtaataatattaataataataGAACAGTTTCAGGGATAGGGTTCCCTGCTTCAATGTCAAGTACTAGTACTTACCAAGCTCGCAGTCTTGAACATTATGGAGATGCGTGA 810 0.416 MDCNNHIKPSLSPEEQNIDMMLMMMMQLPEFSSSSNGHESVEPFPPSDHEYYNSANASNNTLPLADLIDNNPPNQTPWSSSFTNLPLQASTTNTISFTNNTPLILQETPPTLFSNYPNEVVTNLYGTVPSEKRNSMAAMREMIFRIAAMQPIYIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQVQSLKERAAVAAGNNINNNRTVSGIGFPASMSSTSTYQARSLEHYGDA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02752 269 Pfam Helix-loop-helix DNA-binding domain 178 218 IPR011598 GO:0046983
Car05g02752 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Car05g02752 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 228 IPR036638 GO:0046983
Car05g02752 269 MobiDBLite consensus disorder prediction 31 56 - -
Car05g02752 269 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 12 258 - -
Car05g02752 269 CDD bHLH_AtIND_like 170 228 - -
Car05g02752 269 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 258 IPR045843 GO:0003700|GO:0006355
Car05g02752 269 Gene3D - 168 240 IPR036638 GO:0046983
Car05g02752 269 SMART finulus 175 224 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02752 Car-Chr5 72582909 72584249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02752 136 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 87.000 1.28e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g02752 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02752 - - gmx:100815041 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02752 05 72582909 72584249 Car05g02752 05 72582909 72584249 ECH