Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02727 ATGGAAGCAATCAATAGAAGTTCCTCAACAACAACATCTTCGTCAGATTCATGCTCTtcagaatcaaatcaaattaaccaccaaaacaaactagacagaatcaaaGGTCCATGGAGTGCAGAAGAAGACAGAATACTAACCAGACTCGTTGAACAACACGGACCACGAAACTGGTCACTCATCAGTCGTTACATTAAAGGGAGGTCCGGCAAATCGTGTAGACTCCGGTGGTGTAATCAACTCAGCCCCACCGTGGAACACCGTCCTTTTTCGCCGCAAGAGGATGAAACAATTATAGCAGCGCACGCTCAATACGGTAACCGTTGGGCTACCATTGCTCGTCTTTTACCGGGGAGAACCGATAATGCTGTGAAGAATCATTGGAATTCGACGCTTAAGCGTAAGGCGAGTGGTCTTGGTGGTGATTGTTCTGTTGTGGTTGCCGGAAATGTAACTGCTAGTAATGAGGGGGGAAGTTTTTCTTCCGGTCGTGGTGTTCGATCTTGTTTGCCTGTGGAGGATGATCCGTTGACTGCGTTGACTCTGGCTCCTCCGGGGAATGGTGTGGATTATCAGGAGGAGGTTGTTGCTGATCACCGACAGTCGCCGGAAAATGTTCCGTCGGGGTTTTGGGATGTGATGAGAGGTGTGATTGCAAGGGAAGTTAGGGAATATGTGTCTTCTAATTTTTCTCATAACTCTGGTTTTCATTGA 714 0.4482 MEAINRSSSTTTSSSDSCSSESNQINHQNKLDRIKGPWSAEEDRILTRLVEQHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSPQEDETIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRKASGLGGDCSVVVAGNVTASNEGGSFSSGRGVRSCLPVEDDPLTALTLAPPGNGVDYQEEVVADHRQSPENVPSGFWDVMRGVIAREVREYVSSNFSHNSGFH 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02727 237 CDD SANT 89 132 IPR001005 -
Car05g02727 237 MobiDBLite consensus disorder prediction 1 30 - -
Car05g02727 237 PANTHER MYB TRANSCRIPTION FACTOR 2 223 - -
Car05g02727 237 Pfam Myb-like DNA-binding domain 38 96 - -
Car05g02727 237 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Car05g02727 237 Gene3D - 89 135 - -
Car05g02727 237 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Car05g02727 237 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Car05g02727 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 136 IPR017930 -
Car05g02727 237 MobiDBLite consensus disorder prediction 1 36 - -
Car05g02727 237 PANTHER MYB PROTEIN-RELATED 2 223 - -
Car05g02727 237 Gene3D - 34 86 - -
Car05g02727 237 CDD SANT 37 79 IPR001005 -
Car05g02727 237 SMART sant 86 134 IPR001005 -
Car05g02727 237 SMART sant 34 83 IPR001005 -
Car05g02727 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 85 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02727 Car-Chr5 72348487 72350397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02727 32 138 MYB Transcription Factor Family AT3G50060 80.374 4.16e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car05g02727 Myb_DNA-bind_6 3.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02727 - - gmx:778051 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02727 05 72348487 72350397 Car05g02727 05 72348487 72350397 ECH