LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g02719	ATGGCTATCCGTGTTACCTTCTCCTTTTCCGGTTATGTCGCACAGAATCTAGTCTCCTCCGCCGGCGTTCGGGTCGCCAATTCTCGTTGTGTCCAAGAATGTTGCATCCTCTCTCGCTTCTTTGGACACAACCAGAAACGCGATCGCGATCGTTCCGGCGGCGGCGGCGTACGCAATTTCTACCCCGGTAGACCTAAAAACTCCACATCCATCTCTGCTTATTCTACCCTCGCCGGAGAGATCCTCAATGAAGGATGTAAGAATCCGATCATCTTAGGTTTGATTTCGGTTATGAAGTCAACGGCTTGTGTTTCTGGGTCATCAACGGCGGCTATGGGTATTATGGGCATTTCACCTTTTAAGACTTCTTCGATTATACCCTTTTTGCAGGGTTCGAAGTGGCTTCCTTGTAATGAATCTGTTCCTGATCCTACAACGTGGGAGGTTGATAAAGGCGGAACGCAGTGTGTTCAAATTTCTAAAAAAGAATCGAGTTTGAATCAAAGAGAGACTAGTGGTTGGATTTCGCGGTTGTTGAATGTTTGTACTGAAGATGCTAAAGCTGTTTTCACTGCTGTTACTGTTAGTTTATTGTTTAAATCGTTTTTGGCTGAACCTAAATCTATTCCTTCATCTTCTATGTACCCAACTCTTGAAGTTGGTGACCGTGTTTTAACAGAAAAGTTTTCTTTCTTCTTTAGAAAGCCTGATGTTTCTGATATTGTGATATTCAAAGCGCCACCTTGGTTGCAGGAGTTTGGTTTTAGTGCATCTGATGTGTTTATAAAAAGGGTTGTGGCTAAGGCTGGTGATGTTGTTGAAGTTCGTGACGGGAAACTACTGGTGAATGCTGTTGCTGAAGAGGAGGAATTTGTATTAGAACCTCTTGCTTATGAGATGGCTCCAATGGTTGTGCCGGAAGGACATGTTTTTGTGATGGGAGACAATCGTAACAAAAGTTTTGATTCTCATAACTGGGGTCCACTCCCAATTGAGAACATTGTTGGTAGGTCCATGTTTCGCTACTGGCCTCCATCCAAAGCAGCGGACACTGTCACAGTTCATAACCCTCCACCCAGAAATAATTCTGTGGCAGTTTCTTGA	1104	0.4411	MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECCILSRFFGHNQKRDRDRSGGGGVRNFYPGRPKNSTSISAYSTLAGEILNEGCKNPIILGLISVMKSTACVSGSSTAAMGIMGISPFKTSSIIPFLQGSKWLPCNESVPDPTTWEVDKGGTQCVQISKKESSLNQRETSGWISRLLNVCTEDAKAVFTAVTVSLLFKSFLAEPKSIPSSSMYPTLEVGDRVLTEKFSFFFRKPDVSDIVIFKAPPWLQEFGFSASDVFIKRVVAKAGDVVEVRDGKLLVNAVAEEEEFVLEPLAYEMAPMVVPEGHVFVMGDNRNKSFDSHNWGPLPIENIVGRSMFRYWPPSKAADTVTVHNPPPRNNSVAVS	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g02719	367	CDD	S26_SPase_I	205	337	IPR019533	GO:0004252\|GO:0006465
	Car05g02719	367	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	202	218	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Car05g02719	367	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	261	273	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Car05g02719	367	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	305	324	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Car05g02719	367	Gene3D	Umud Fragment, subunit A	199	356	-	-
	Car05g02719	367	ProSitePatterns	Signal peptidases I signature 3.	310	323	IPR019758	GO:0004252\|GO:0016021
	Car05g02719	367	ProSitePatterns	Signal peptidases I serine active site.	211	218	IPR019756	GO:0004252\|GO:0016021
	Car05g02719	367	TIGRFAM	sigpep_I_bact: signal peptidase I	188	344	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Car05g02719	367	PANTHER	THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED	1	360	-	-
	Car05g02719	367	Pfam	Signal peptidase, peptidase S26	185	343	IPR019533	GO:0004252\|GO:0006465
	Car05g02719	367	PANTHER	SIGNAL PEPTIDASE I	1	360	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Car05g02719	367	SUPERFAMILY	LexA/Signal peptidase	201	348	IPR036286	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g02719	Car-Chr5	72296245	72299162	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g02719	214	344	MADS-box Gene Family	AT1G29960	32.576	2.06e-13	64.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g02719	K03100		-	gmx:100802457	546.584

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car05g02719	05	72296245	72299162	Car05g02719	05	72296245	72299162	ECH