Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02708 ATGGCAAAGTATTTTGGAAGGCTTTCCAGAGTGGAAAACAATATGGAATTTGACGAACATCaagaccaagaggaggaggaggaagaagaagaaATGGGATTCCCGGTCACGCCGGTAGCCGGTTACGACTCTTTAGGAAACTCAGGCTTGAGGTCCAAAATTGGCAGCGTGGGACACGACGGAGGATCAGTCACCACCGCAAGCGGTGGTCGCAAAAGTGGACCCACAGGGACAGTCAGATACAGAGAATGTCAAAAGAACCACGCCGTCAACATCGGCGGTCACGCCGTTGATGGCTGTTGCGAGTTCTTAGCTGCCGGTGAGGAAGGAACACTGGAAGCCGTAATTTGCGCTGCCTGTAACTGTCACCGAAACTTTCATCGCAAGGAGATCGACGGTGAACTAACCTCTCAATCTCATAATCATCAACCGCGGcaacaccaacaccctcagtaccaccaccaccatcaattatccccttactaccaccgcgcagcgcaaccacctccacctggatacctccaccaccaccTGGTAACTCCACTGCTATCACAACATCGTCCATTAGCACTTCCACCTACTGCATCGGGTGGGGGATTCAGTAGAGAAGATGATGACGTTTCAAATCCGAGTAGCAGCGGTGGCGGTGGCGGAAGTGGAACGAAGAAAAGGTTTAGAACAAAGTTCACTCAAGAACAGAAGGATAGGATGCTTGCATTTGCGGAACAGATTGGATGGAGAATCCAGAAACAAGATGAAGCTgcaattgaacaattctgtgttgagaattgtatcaagagaaatgtgcttaaggtttggatgcataataacaagcacactcttggtaagaaaCCCTAA 858 0.3718 MAKYFGRLSRVENNMEFDEHQDQEEEEEEEEMGFPVTPVAGYDSLGNSGLRSKIGSVGHDGGSVTTASGGRKSGPTGTVRYRECQKNHAVNIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGELTSQSHNHQPRQHQHPQYHHHHQLSPYYHRAAQPPPPGYLHHHLVTPLLSQHRPLALPPTASGGGFSREDDDVSNPSSSGGGGGSGTKKRFRTKFTQEQKDRMLAFAEQIGWRIQKQDEAAIEQFCVENCIKRNVLKVWMHNNKHTLGKKP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02708 285 MobiDBLite consensus disorder prediction 18 33 - -
Car05g02708 285 SUPERFAMILY Homeodomain-like 208 283 IPR009057 -
Car05g02708 285 MobiDBLite consensus disorder prediction 52 78 - -
Car05g02708 285 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 68 284 - -
Car05g02708 285 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 81 130 IPR006456 -
Car05g02708 285 MobiDBLite consensus disorder prediction 137 176 - -
Car05g02708 285 Gene3D - 207 282 - -
Car05g02708 285 Coils Coil 8 28 - -
Car05g02708 285 MobiDBLite consensus disorder prediction 188 225 - -
Car05g02708 285 Pfam ZF-HD protein dimerisation region 79 131 IPR006456 -
Car05g02708 285 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 68 284 - -
Car05g02708 285 MobiDBLite consensus disorder prediction 13 33 - -
Car05g02708 285 MobiDBLite consensus disorder prediction 59 73 - -
Car05g02708 285 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 222 278 IPR006455 -
Car05g02708 285 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 80 131 IPR006456 -
Car05g02708 285 MobiDBLite consensus disorder prediction 146 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02708 Car-Chr5 72171104 72172419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02708 24 281 ZF-HD Transcription Factor Family AT4G24660 49.421 1.23e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car05g02708 ZF-HD_dimer 5.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02708 - - gmx:100820567 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01174 02 35202106 35205038 Car05g02708 05 72171104 72172419 PCT