Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02697 ATGGCTCCTTCCCCTACTTCATCCTTCACTTTCTCCCTCTACTTCCTCACTACTCTCATTCTAACCGTTGTTGCATTcacagaacacaacaacacacaaacacaaacaACTAGTCCACCCCCAACTCCCATTCCTCAAGATGACGCCACTTCCATTCCTCAACAACAACACACCTTCTCAACATTCAAACCAAGCGTAGCCATTGTCATCAGCGTTCTAACCGTCACTTTTTCTTTCACCTTCCTCCTCCTTCTCTACATCAAACACTTCAGCACCACAACCACCTCTGAACCTATTAACATCGACAGTAGCAGTAGTACTGCCGCCGGAATCTCATCACTCACCGCCGGTAGAAAAAACTCTGGCATAAACCGTTCGGTAGTTGAATCGTTGCCAATCTTCAGATTTGGATCACTTTTAGGTCAAAAAGACGGTCTAGATTGCGCGGTTTGTCTTTCCAAATTCGAATCTTCGGAGATTCTACGGTTATTGCCGAAATGTAAACACGCTTTTCACGTGGAATGTGTAGATACATGGTTAGAAGCACATTCAACTTGTCCTCTTTGCCGTTACAGAGTGGATCCCGAAGATATTCTTCTCGTCTTGGAAAATtcatcatcaacaacaacatcaacatccacatcaTCGCAATTGCAATTGAATCAGAATAAAAAAGAATTAGATGATTTTGTAGACATTGAAAGAGGAAGAGGAATAGAGTATTACCGAAAGAGACATTCGTCGGTAGGAGAGAAGGAATGGGAACGAGAACGAAGGAAAACGGCGTCGTTTAGATGGTCATTGGATAGTTCTAGAAAGAAAAACGAGAATGCGCATGCGAGCGTTGGAATCGGGATTGGGAGTTGTTTTGTGGGTCCCAGAAAAGACGGGATGTTGTTAACGAAAGAAGAGACGGAGAAGAGGAGTAGCGTGGAAAGGAGGAGGTTGGAACACAAGATAATTGTGTCACCGAAGGTGAGTAGTGGGGTCCACAGAGATCAACGGTGGAGTGATGTACAGCCGTGTGATCTGTTGTATCTAACGGCTGAGATGATGATAATGAGTGAGTCGTCGGGGAGAGTGAAGAATAGGAATAGGAATGGCAGAAGTGTAATTAATTCGAGAAGTGTGTCTGAGATCACGGGATTCAGTAGGTTACCATTTTCAAGCAATAGGTGTAGCAGCAGCAGCAAGCAATAA 1200 0.42 MAPSPTSSFTFSLYFLTTLILTVVAFTEHNNTQTQTTSPPPTPIPQDDATSIPQQQHTFSTFKPSVAIVISVLTVTFSFTFLLLLYIKHFSTTTTSEPINIDSSSSTAAGISSLTAGRKNSGINRSVVESLPIFRFGSLLGQKDGLDCAVCLSKFESSEILRLLPKCKHAFHVECVDTWLEAHSTCPLCRYRVDPEDILLVLENSSSTTTSTSTSSQLQLNQNKKELDDFVDIERGRGIEYYRKRHSSVGEKEWERERRKTASFRWSLDSSRKKNENAHASVGIGIGSCFVGPRKDGMLLTKEETEKRSSVERRRLEHKIIVSPKVSSGVHRDQRWSDVQPCDLLYLTAEMMIMSESSGRVKNRNRNGRSVINSRSVSEITGFSRLPFSSNRCSSSSKQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02697 399 CDD RING-H2_EL5_like 147 190 - -
Car05g02697 399 SMART ring_2 148 189 IPR001841 -
Car05g02697 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 197 IPR013083 -
Car05g02697 399 PANTHER RING-H2 FINGER PROTEIN ATL43 31 392 - -
Car05g02697 399 SUPERFAMILY RING/U-box 127 195 - -
Car05g02697 399 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Car05g02697 399 MobiDBLite consensus disorder prediction 31 53 - -
Car05g02697 399 Pfam Ring finger domain 147 190 IPR001841 -
Car05g02697 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 31 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02697 Car-Chr5 72071650 72073399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02697 56 385 C3H Transcription Factor Family AT5G05810 47.977 1.44e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02697 K19041 - gmx:100794083 289.656