Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02695 ATGATGAAAATGAAGAGGAAGAAGATAACTATAAAGAAAATCGACGACAAAACGGCGAGGCAGGTAACATTTTCTAAGAGAAGGAAAGGGCTATTCAAGAAAGCTGAAGAGCTTTCAGTGCTATGTGATGCTGAGGTTGGACTCATTGTTTTCTCATCTACTGGGAAGCTCTTTGATTATTGCAGCACCAGTATGAAGGACACAATTACAAGGTATAATGCGCAGGACCATGGCATCAACAAATTGAACACACCATCTCAAGAATTACAGCTAGAGGCTAGCAACCGGATCAAATTGGACAAGGAAATTGCAGATAGAACCCAACAACTAAAGCAGATGAAAGGTGATGATATTGAAGCACTAAATCTAAATGAGTTGCAGCTGCTGGAGAAAACACTTCATATAGGATTTAACCGCGTGATTGAGACAAAGGAAAAGCGGATTATGAGTGAGATTTCTGATCTTCAGAAAATGGTTGAAGTAAGACAAATGATATCCATGATGAGCAAAACACGTTGTCCTTCTCTAATAGACTCAAAAATTGGAATACAAGAAGAACGGGTTTCATTGGATTCTATTAGTTGTGCCAGTGACCCTCTTTTTGAGGACGATTACTCAGACACATCTCTTAAGTTAGGGTTACCCTTCTCTAACCGAAGATGTTAA 666 0.3919 MMKMKRKKITIKKIDDKTARQVTFSKRRKGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYCSTSMKDTITRYNAQDHGINKLNTPSQELQLEASNRIKLDKEIADRTQQLKQMKGDDIEALNLNELQLLEKTLHIGFNRVIETKEKRIMSEISDLQKMVEVRQMISMMSKTRCPSLIDSKIGIQEERVSLDSISCASDPLFEDDYSDTSLKLGLPFSNRRC 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02695 221 ProSiteProfiles K-box domain profile. 89 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car05g02695 221 Pfam K-box region 94 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car05g02695 221 ProSitePatterns MADS-box domain signature. 6 60 IPR002100 GO:0003677|GO:0046983
Car05g02695 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 212 - -
Car05g02695 221 ProSiteProfiles MADS-box domain profile. 4 64 IPR002100 GO:0003677|GO:0046983
Car05g02695 221 CDD MADS_MEF2_like 19 72 IPR033896 GO:0000977|GO:0045944
Car05g02695 221 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Car05g02695 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 60 IPR002100 GO:0003677|GO:0046983
Car05g02695 221 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 4 212 - -
Car05g02695 221 SUPERFAMILY SRF-like 6 75 IPR036879 GO:0003677|GO:0046983
Car05g02695 221 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Car05g02695 221 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Car05g02695 221 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Car05g02695 221 Gene3D - 16 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02695 Car-Chr5 72052612 72059989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02695 4 218 MADS-box Gene Family AT2G22540 47.500 2.72e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car05g02695 K-box 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02695 - - cam:101509413 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02695 05 72052612 72059989 Car05g02695 05 72052612 72059989 ECH