Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02679 ATGTACAACTCTATGAACATGTCCGACCAGATCAAAAACAACGAAGACGCCGACAATCACATCCATTACGATTCGCATACCCTAGAAGACGGTTCCGGCGAAGGAGAAGGACCAATTCACGATGTTTCTCTCGAAGATGTTTATGTTTCCGGTGATGGAAACCACGCTGACATGTCAATTCAACGCTTCGATGATTCTAGTCAGCTCACTCTTTCGTTTCGTGGTCAAGTTTATGTTTTCGATTCTGTTACCCCTGAGAAGGTTCAATCAGTTTTATTACTGTTAGGAGGATGTGAACTGTCTTCGGGTTCGCAATGTTTGGACACGTCGCCTTTAAATCAGAGGAGTGGCACTGAATTTCCTACAAGATGTAGTCAACCACAGCGAGCAGCGTCGTTGATTAGGTTTCGTCAGAAGAGGAAAGAGCGAAACTTTGATAAGAAAGTTAGATATGGTGTGCGTCAAGAAGTTGCTCTAAGGATGCAACGTAGTAAGGGTCAATTTACATCATCTAAGAAACAAGATGGAGCTAACAATTGGGGTTCAGATCCAGAGTCAGGGCAAGATGTGGTTCAATCCGAAACCTCATGCACACACTGTGGAACAAGTTCAAAGTCTACCCCTATGATGCGAAGGGGGCCATCTGGCCCAAGGACACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTACTTTGAGGGATCTATCTACTTCTAAGAGACACCATGAACAGCACACTCTTGCGGCACCTCCTGAGCAGGGTACTTTGAGGGATCTTTCTAATTCTAAGAGAAACCACGAACTGCACACACTTGCATCACCTAAGACGGTATGCTTTCCTTGA 849 0.4499 MYNSMNMSDQIKNNEDADNHIHYDSHTLEDGSGEGEGPIHDVSLEDVYVSGDGNHADMSIQRFDDSSQLTLSFRGQVYVFDSVTPEKVQSVLLLLGGCELSSGSQCLDTSPLNQRSGTEFPTRCSQPQRAASLIRFRQKRKERNFDKKVRYGVRQEVALRMQRSKGQFTSSKKQDGANNWGSDPESGQDVVQSETSCTHCGTSSKSTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSTSKRHHEQHTLAAPPEQGTLRDLSNSKRNHELHTLASPKTVCFP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02679 282 MobiDBLite consensus disorder prediction 1 40 - -
Car05g02679 282 PANTHER GATA TRANSCRIPTION FACTOR 25 8 268 - -
Car05g02679 282 Gene3D - 188 249 IPR013088 GO:0006355|GO:0008270
Car05g02679 282 Pfam CCT motif 129 171 IPR010402 GO:0005515
Car05g02679 282 MobiDBLite consensus disorder prediction 162 214 - -
Car05g02679 282 Pfam GATA zinc finger 197 233 IPR000679 GO:0006355|GO:0043565
Car05g02679 282 MobiDBLite consensus disorder prediction 13 40 - -
Car05g02679 282 ProSitePatterns GATA-type zinc finger domain. 197 224 IPR000679 GO:0006355|GO:0043565
Car05g02679 282 MobiDBLite consensus disorder prediction 238 261 - -
Car05g02679 282 CDD ZnF_GATA 196 238 IPR000679 GO:0006355|GO:0043565
Car05g02679 282 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 247 - -
Car05g02679 282 ProSiteProfiles GATA-type zinc finger domain profile. 191 247 IPR000679 GO:0006355|GO:0043565
Car05g02679 282 MobiDBLite consensus disorder prediction 162 210 - -
Car05g02679 282 SMART GATA_3 191 244 IPR000679 GO:0006355|GO:0043565
Car05g02679 282 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Car05g02679 282 Pfam tify domain 66 96 IPR010399 -
Car05g02679 282 PANTHER GATA TRANSCRIPTION FACTOR 28 8 268 IPR045280 GO:0006355
Car05g02679 282 SMART tify_2 62 97 IPR010399 -
Car05g02679 282 ProSiteProfiles CCT domain profile. 129 171 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02679 Car-Chr5 71828852 71833883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02679 66 252 Tify Gene Family AT4G24470 65.079 1.79e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car05g02679 CCT 3.6e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02679 - - lja:Lj0g3v0164269.1 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02679 05 71828852 71833883 Car05g02679 05 71828852 71833883 ECH
Car02g01208 02 36537065 36541903 Car05g02679 05 71828852 71833883 PCT