Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02678 ATGGCGGAACAGCCTCTTCAATTCGAAGACCCTGCAATtgatgttgttgacgacgaagacgacgatgatgatggtggcgatgatACTATGGATGAGTTGGAGGAAACGAATGTGAATTCAGTGAACGTTGCCGCAGCGAGTGCGAATCAAGACGACGTCGTTTTGCCTACTACGCGTGCTAGTGAACTCACTCTTTCTTTTGAGGGTGAGGTTTACGTTTTTCCCTCTGTCACACATCAGAAGGTACAAGCTGTTTTGCTGCTATTGGAAGGACGTGATGGGCAGGCAGGCATGCCTACTGTTGAACTACCATTTGATCAAAGTAACAAGGGCATGGGCAGTATTACAAAGCGCTCAAACCTTTCACGAAGAATAGCTTCCTTGGTCAGGTTCCGCGAAAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGATACACTGTGAGAAAAGAGGTGGCAGAAAGGATGCATCGGAAGAAGGGGCAGTTTGCATCCTTGAAGCAAAACCCTAGTTCCTCTAATTGTGATTCACCACAGAGTGTTGGTCAAGATGGCACTCCTAATCCAGGATCTTTACGTAGATGTCAGCATTGTGGAGTCAATGAAAATAATACTCCTGCAATGCGCCGCGGGCCAGCTGGACCAAGAACTTTATGTAATGCATGTGGCCTTATGTGGGCCAACAAGGGGACACTCAGAGATCTCAGTAAGGGAGGAAGAAACCTTTCTGTTGAGCAAAGTGGTCTGGACCCTCGTATTGATGTCAAGCCTACTGTTCTTGAAGGGGAATTGTCTGTCATCCAAAATGAACAAGGTTTTTCTAAAATTCCTTCCGAGGCTATTGCCGCTGAAGGTTCAAATAATCATACATTAGACCCCTGTGATGAGGAATTGCCTGAATCTGCAGAACACCTAACAAACACTCTGCCATTGGAAATTGATCAATCTTCGGATAATGATGATGAGCAGGAACCCCTGGCTGAGCTTTCCAATCCTTCAGATACAGGAATGTCGAATCCTTCGGATACAGATGTTGACATTCCTGGAAACTTTGATTAG 1059 0.4325 MAEQPLQFEDPAIDVVDDEDDDDDGGDDTMDELEETNVNSVNVAAASANQDDVVLPTTRASELTLSFEGEVYVFPSVTHQKVQAVLLLLEGRDGQAGMPTVELPFDQSNKGMGSITKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAERMHRKKGQFASLKQNPSSSNCDSPQSVGQDGTPNPGSLRRCQHCGVNENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSGLDPRIDVKPTVLEGELSVIQNEQGFSKIPSEAIAAEGSNNHTLDPCDEELPESAEHLTNTLPLEIDQSSDNDDEQEPLAELSNPSDTGMSNPSDTDVDIPGNFD 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02678 352 Pfam GATA zinc finger 195 231 IPR000679 GO:0006355|GO:0043565
Car05g02678 352 Gene3D - 191 242 IPR013088 GO:0006355|GO:0008270
Car05g02678 352 PANTHER GATA TRANSCRIPTION FACTOR 28 4 351 IPR045280 GO:0006355
Car05g02678 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 239 - -
Car05g02678 352 MobiDBLite consensus disorder prediction 328 345 - -
Car05g02678 352 ProSiteProfiles Tify domain profile. 56 91 IPR010399 -
Car05g02678 352 Pfam CCT motif 124 165 IPR010402 GO:0005515
Car05g02678 352 ProSitePatterns GATA-type zinc finger domain. 195 222 IPR000679 GO:0006355|GO:0043565
Car05g02678 352 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 4 351 - -
Car05g02678 352 MobiDBLite consensus disorder prediction 302 352 - -
Car05g02678 352 MobiDBLite consensus disorder prediction 158 189 - -
Car05g02678 352 ProSiteProfiles CCT domain profile. 124 166 IPR010402 GO:0005515
Car05g02678 352 SMART GATA_3 189 242 IPR000679 GO:0006355|GO:0043565
Car05g02678 352 MobiDBLite consensus disorder prediction 1 32 - -
Car05g02678 352 CDD ZnF_GATA 194 238 IPR000679 GO:0006355|GO:0043565
Car05g02678 352 MobiDBLite consensus disorder prediction 164 189 - -
Car05g02678 352 Pfam tify domain 60 89 IPR010399 -
Car05g02678 352 SMART tify_2 56 91 IPR010399 -
Car05g02678 352 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02678 Car-Chr5 71819978 71826764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02678 6 237 Tify Gene Family AT1G51600 49.597 1.70e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car05g02678 CCT 9.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02678 - - gmx:100801328 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02678 05 71819978 71826764 Car05g02678 05 71819978 71826764 ECH