Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02642 ATGGAGaacaacaacaacaatcaacaacaaTATCCAACGCCGCAACCCTCGGCGGTCACTCCGGCGGCCCCATTCCAACACCTCCTTCAACAACAACAACAGCAGCTTCAAATGTTCTGGTCATACCAAAGACAAGACATCGAACACGTCAACGATTTCAAAAACCACCAACTCCCATTAGCACGCATTAAGAAAATCATGAAAGCCGATGAAGATGTTCGCATGATCTCCGCTGAAGCACCTATCCTTTTCGCTAAAGCTTGTGAGCTTTTCATTCTCGAACTCACCATTCGTTCTTGGCTTCACGCTGAAGAGAATAAACGACGAACCCTACAGAAAAACGACATCGCTGCTGCTATTACGAGGACTGATATTTTTGATTTTTTGGTTGATATTGTTCCTCGTGATGAGATTAAGGATGAATCTACCATTGTTGGTGCTACTGCTAGTGGTGTTCCTTATTATTATCCTCCTATGGGTCAGCCTGCTGGAATGATGATTGGTCGTCCTGCTGTTGATCCGGCTACTGGTGTTTATGTTCAGCCTCCTTCTCAGGCTTGGCAGTCTGTTTGGCAGACTGGTGCTGATGACTCTTCTTACACTGCTGCCGGAAGTAGTGGTCAGCCCAATGCCGATGGCTAG 642 0.4517 MENNNNNQQQYPTPQPSAVTPAAPFQHLLQQQQQQLQMFWSYQRQDIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDESTIVGATASGVPYYYPPMGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGADDSSYTAAGSSGQPNADG 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02642 213 SUPERFAMILY Histone-fold 8 129 IPR009072 GO:0046982
Car05g02642 213 MobiDBLite consensus disorder prediction 1 20 - -
Car05g02642 213 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 2 213 - -
Car05g02642 213 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 213 - -
Car05g02642 213 Pfam Core histone H2A/H2B/H3/H4 10 120 IPR007125 GO:0003677
Car05g02642 213 MobiDBLite consensus disorder prediction 1 16 - -
Car05g02642 213 Gene3D Histone, subunit A 23 135 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02642 Car-Chr5 71421939 71425640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02642 18 213 CCAAT-HAP5 Transcription Factor Family AT3G48590 81.250 1.16e-103 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Car05g02642 CBFD_NFYB_HMF 2.1e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02642 - - gmx:100818447 340.117