Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02635 ATGGAGTGGAATTTGAAATCAACTTCATGGGATTTAGGGGGTATAGAAGAGGCAACATTACCCAACATAGAAACAATGGATGATGATGAATCAAGCAGATTTGAAGTTTATAGAATGAAAGGGGAGTTTTCTGTTGATTTGAAGCTTGGTCAAGTGGTTAATTCTTCCAATGAATCACCACTTCCGTTATTATCCTCCAAAGATGCTTCTGTTTCCAAAATGGGAACCCCTCCTCCTCCTACTCCTTCTTCAGGATCTTCTAAGAGAGCTAGAGTGGTTAATAGTTCAGCAATGACAGTGTCTTGTCTTGTGGATGGCTGTAATTCTGATCTTAGTAAGTGTAGAGATTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCCAAGACCCCTGAGGTTACAATTGGTGGCCTCAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAGCAATTTGATGAAAGAAAAAGAAGCTGTAGGAAACGTTTAGATGGACACAACAGAAGGAGAAGAAAACCTCAACCAGAACCTTTAACCCGACCTGCTAGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGCTACCCTTTTCAAGTTCTACAGCCATGGTGAACTCGCCTTGGCGTAGTGGACTCATTACTTCCTGCCACATTAACAACCAACACCAACAAGTGCATGTGGTTGATCATAAACAAGATCTTTTTCTTGGTTCTACTACAACCAACTATGGAGAAACCAAACGACTCCAATTCTCACAAAGTGACAACAATCCCACACTTGATCATAACCAAAACAACACACCTCTTTTAAGGACAAGTCCTTTGTCAGAAAGTGATGGTCTGAGAACCAAAATGTGCTGTGATAACTTAACAACAACAAGTTCAGTACACGAGTCACCTTGTGCTCTCTCTCTTCTGTCATCATCTCAGACTCACACTACACATGAGAATGGTTTGAATCAAATGGTGCAGTCTCATTCAATGTCAAGTATGCAGCCCTTAGGACTGAGTTTGCATGCTAACAATGGTTTTGAGTCAATGGATAGAGTGTTGGTTCCTAATGGGAGTGAGAGTGATCATTGTTCTTCATTGTATAACATAGGTTCTGATGGATCACAAGGCAATGAAGCACCTCAACTATTTCCATATCAATGGGAATAG 1170 0.4094 MEWNLKSTSWDLGGIEEATLPNIETMDDDESSRFEVYRMKGEFSVDLKLGQVVNSSNESPLPLLSSKDASVSKMGTPPPPTPSSGSSKRARVVNSSAMTVSCLVDGCNSDLSKCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPASSFLSNYQGTQLLPFSSSTAMVNSPWRSGLITSCHINNQHQQVHVVDHKQDLFLGSTTTNYGETKRLQFSQSDNNPTLDHNQNNTPLLRTSPLSESDGLRTKMCCDNLTTTSSVHESPCALSLLSSSQTHTTHENGLNQMVQSHSMSSMQPLGLSLHANNGFESMDRVLVPNGSESDHCSSLYNIGSDGSQGNEAPQLFPYQWE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02635 389 MobiDBLite consensus disorder prediction 254 278 - -
Car05g02635 389 MobiDBLite consensus disorder prediction 163 188 - -
Car05g02635 389 MobiDBLite consensus disorder prediction 56 72 - -
Car05g02635 389 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 389 IPR044817 GO:0003677
Car05g02635 389 MobiDBLite consensus disorder prediction 56 89 - -
Car05g02635 389 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 7 389 - -
Car05g02635 389 ProSiteProfiles Zinc finger SBP-type profile. 99 176 IPR004333 GO:0003677
Car05g02635 389 SUPERFAMILY SBT domain 100 181 IPR036893 GO:0003677|GO:0005634
Car05g02635 389 Gene3D - 93 163 IPR036893 GO:0003677|GO:0005634
Car05g02635 389 Pfam SBP domain 102 175 IPR004333 GO:0003677
Car05g02635 389 MobiDBLite consensus disorder prediction 370 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02635 Car-Chr5 71371897 71375262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02635 1 389 SBP-box Gene Family AT5G50670 38.424 5.10e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car05g02635 SBP 5.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02635 - - gmx:100806507 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00560 06 5617164 5621767 Car05g02635 05 71371897 71375262 PCT