Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02618 ATGGGTTGCGTGCTTGGAACGCCGTCCGGTGACGGAGCTGAACGCCGTCGCCGGGGAAGCCAGTGTAACGGCTCTTTCGATGGCNNNNNNNNNNNNNNNNNNTCTTCCGATGGAGGTATTAATGCAGTTAGGGTTCGGGAGAGACAAACGAATCGACACACCGGAGATTTTCCAAAGACTCTTCCGGCGCTGGAGCGTCGGAAACCTATGCTCGATCCGTGTGCTGTGAATCAACAAGGTTGGCCGTCTTGGTTGATGGCCGTCGCCGGTGAAGCAATCGGTGATTGGACTCCTCGTCGCGCCAACACTTTTGAAAAGCTTGCTAAGATTGGACAGGGAACTTATAGTAATGTGTATAAAGCTAGAGACCTTGTTACAGGGAAGATTGTGGCTTTGAAAAAAGTTAGATTTGATAATTTGGAGCCAGAGAGTGTGAAGTTCATGGCAAGAGAGATACTTGTTTTGAGGAAGCTTGATCATCCCAATGTTTTAAAGCTTGAAGGATTGGTTACTTCTAGAATGTCATGTAGTCTTTACTTGGTATTTGAGTATATGGAACATGATCTTGCAGGGCTTTCAGCTGGTCAAGGTGTTAAGTTCACAGAATCTCAGGTCAAATGCTTTATGAAGCAATTACTTTCTGGTCTTGAGCATTGCCACAGTCGAGGCGTATTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATCCTTAAAATTGCAGATTTTGGACTGGCAACTTTCTTTGATCCAACGCAAAAGCAAAGCATGACAAGCAGAGTTGTGACACTTTGGTATCGACCCCCTGAGCTTCTTCTTGGGGCTACAGTTTATGGTGTAGGTATTGACCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCCGGCCGAACGGAGGTTGAACAGCTGCACAAGATTTTTAAATTGTGTGGCTCTCCAGCTGATGAATATTGGAGGAAGTATAGATTGCCAAATGCTACAATCTTTAAGCCACAGCAGCCATATAAACGTTGTATCTCAGAAACATTCAAGGATTTCCCTCCATCCTCGCTACCTCTAATTGAAACTCTTCTTTCAATAGATCCTGATGGCCGTGGCACTGCCTTGGCTGCTCTTAATAGTGAATTTTTTGCCACTGAGCCCTATGCTTGTGAACCGTCGAGTTTGCCAAAGTATCCTCCTAGCAAAGAATTGGATGTAAAAATGAGAGATGAAGAAGCTAGAAGGCAAAAAGCACTAAATGGAAAAGCTAATGCAGTCGATGGTGCCAAAAGAGTAAGACCACGCGAGCGTGGTCGGGCCATCCCGATCCCAGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCGAAAAGCAAGAGTGAGAAATTTCCACCACCTCATCAAGATGGAGCTGTTGGATATCCACAAGATGCATCAAGTAAAGGACCGGTTTCATTTGGCGCTCCCAACACATCCTTTAGTTCAGGGATATTCAACATAAAACCTTCTGGAACTGCTAGAAGTCACGATGGTACAGGAGGACATCACCAAAGGACCAAAACTAAAAAAGAAGAGTCCCAGATGGCGGCGTCATCATGGAAATTTATGCGACCGTTCAAGCCATCAACAATTGGACTTTCAATGGATTTATTATTTAGGAGCAAGTAA 1710 0.448 MGCVLGTPSGDGAERRRRGSQCNGSFDGXXXXXXSSDGGINAVRVRERQTNRHTGDFPKTLPALERRKPMLDPCAVNQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLSAGQGVKFTESQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPTQKQSMTSRVVTLWYRPPELLLGATVYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPADEYWRKYRLPNATIFKPQQPYKRCISETFKDFPPSSLPLIETLLSIDPDGRGTALAALNSEFFATEPYACEPSSLPKYPPSKELDVKMRDEEARRQKALNGKANAVDGAKRVRPRERGRAIPIPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPQDASSKGPVSFGAPNTSFSSGIFNIKPSGTARSHDGTGGHHQRTKTKKEESQMAASSWKFMRPFKPSTIGLSMDLLFRSK 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02618 569 CDD STKc_CDK9_like 104 388 - -
Car05g02618 569 PANTHER OS01G0367700 PROTEIN 77 545 - -
Car05g02618 569 Gene3D Transferase(Phosphotransferase) domain 1 187 428 - -
Car05g02618 569 Pfam Protein kinase domain 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02618 569 MobiDBLite consensus disorder prediction 470 542 - -
Car05g02618 569 Gene3D Phosphorylase Kinase; domain 1 91 186 - -
Car05g02618 569 ProSiteProfiles Protein kinase domain profile. 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02618 569 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Car05g02618 569 SUPERFAMILY Protein kinase-like (PK-like) 98 393 IPR011009 -
Car05g02618 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Car05g02618 569 PANTHER CELL DIVISION PROTEIN KINASE 77 545 - -
Car05g02618 569 MobiDBLite consensus disorder prediction 1 38 - -
Car05g02618 569 MobiDBLite consensus disorder prediction 497 520 - -
Car05g02618 569 SMART serkin_6 104 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02618 569 MobiDBLite consensus disorder prediction 525 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02618 Car-Chr5 71237193 71241529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02618 96 422 Core Cell Cycle Gene Families AT5G10270 50.857 1.56e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Car05g02618 Pkinase 1.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02618 K08819 - gmx:100807756 1004.59