Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02610 ATGGCAGCTTTTTCATACCAATATCATCCTTTCCTTGTTGACTCAGCATTCATGCTTAATATTAACACTGGTCCTCCTCCTTCACAATTTCACCTTCATCAAGAAACATCTTTCAACATGGATACAAATTGTGTTGATGAAACCTCCAAAATTACCACCAATGACAACAATGAGCCTTTTGTCGTAAAAAACCTTAGTCCTCAGTCCTCTATGGTACTTGACAAGCTTCAAATTGGTGATGAACAAACTACTCATATAGTTACAACTATGGACAAGAAAAAGAGAACCAGAAATAATGGACCTTCCTCTAGTAACCCCCAATCTAAGGAAATGgaagctgaagggagaaagaagaaacagaagaagagtaaagaagaggagaagacaaaagcagagaagaagGATCAGAGAAAGTGTTTGGAAGAGCCTCCAACTGGCTATATCCATGTCAGAGCAAGAAGGGGTCAGGCCACTGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATCAGTGAAAGGATGAAGAAATTGCAGCAACTTGTGCCAGGCTGTGATAAGGTCACTGGAAAGGCCCTTATGTTAGATGAAATAATCAATTATGTTCAATCTTTACAGAATCAAGTAGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCTATGATCTATGACTTGGCAACAGACCTAGACACTTTCTTGGGTAGAACAGAGAAATTAAATAGCTTAGCATCACCTTCACCTCTATCATCAGTGTCTGTGTCACATTGCAACAGTCCTAAACAAGCCACCACTTTTGCCGATCCAACAACCAACATCTTCCAAACTGCTACTGACTACCTTTTGGATAATTCAGCTTCAATTTTTCTTCAAGGGCAGAGATCAAATGTTGTCTCTGAGGATGGTAGTAATTTTTGGGACACAGAAGACCAACGACAAAAGTTTCTCCTTCATTCACATGGATTCAGCAACAACTTATGTTCTTTTCATTAA 996 0.3675 MAAFSYQYHPFLVDSAFMLNINTGPPPSQFHLHQETSFNMDTNCVDETSKITTNDNNEPFVVKNLSPQSSMVLDKLQIGDEQTTHIVTTMDKKKRTRNNGPSSSNPQSKEMEAEGRKKKQKKSKEEEKTKAEKKDQRKCLEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMIYDLATDLDTFLGRTEKLNSLASPSPLSSVSVSHCNSPKQATTFADPTTNIFQTATDYLLDNSASIFLQGQRSNVVSEDGSNFWDTEDQRQKFLLHSHGFSNNLCSFH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02610 331 MobiDBLite consensus disorder prediction 83 144 - -
Car05g02610 331 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 331 IPR024097 GO:0006355
Car05g02610 331 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Car05g02610 331 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 331 - -
Car05g02610 331 CDD bHLH_AtBPE_like 146 231 - -
Car05g02610 331 Gene3D - 153 227 IPR036638 GO:0046983
Car05g02610 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 224 IPR036638 GO:0046983
Car05g02610 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983
Car05g02610 331 MobiDBLite consensus disorder prediction 110 144 - -
Car05g02610 331 SMART finulus 162 212 IPR011598 GO:0046983
Car05g02610 331 Coils Coil 108 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02610 Car-Chr5 71166285 71169545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02610 83 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 53.110 9.80e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g02610 HLH 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02610 - - gmx:100806696 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02610 05 71166285 71169545 Car05g02610 05 71166285 71169545 ECH