Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02602 ATGGCTAGGGTTTTGGCTCAGCCAATTAATGTTCCTGGCTTAGTGGCTGGGCACAGGCAAAACCAACACAAGGCATCGGGAAAATCAAAAAGATCAGTCAAAATGATGTGTGCTTTCCGAACAAACAGATTAAGAATGCCAGGTTTCTCAGGACTTCGTACTTTCAATCATTTAGATACTATGCTGAGACCTGGACTAGATTTTCACTCAAAGGTATCAATTGCAATTTCTTCTTCACGGCGAGCAAGGGCTACCAGATGCATACCCAAAGCCATGTTTGAGCGTTTCACAGAGAAAGCAATCAAAGTGATAATGCTAGCTCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTTGGAACAGAGCAGATTCTCTTGGGTCTTATTGGTGAAGGCACTGGTATCGCCGCCAAGGTTTTAAAGTCTATGGGAATCAACCTTAAAGATGCACGTGTGGAAGTGGAGAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATTCCGTTTACTCCCCGTGCAAAGCGTGTTTTGGAACTTTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCAGAGCACTTGCTTCTAGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAACCTAGGCGCTGATCCTACTAATATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCTGACAGTGTAACTGCTACTGTTGGCTCTGGAAGTAGTAACAATAAGATGCCAACTTTGGAGGAGTATGGTACCAATTTGACAAAGTTAGCAGAAGAGGGAAAGTTGGATCCTGTTGTGGGAAGGCAGCCACAAATTGAACGTGTCACCCAAATTTTAGGCCGGCGCACCAAAAATAATCCTTGTCTTATTGGCGAACCTGGTGTTGGCAAGACCGCAATTGCCGAAGGTCTTGCTCAGCGGATTGCAAATGGTGATGTACCTGAAACTATTGAGGGAAAAAAGGTTATAACCCTTGACATGGGTCTGCTTGTAGCTGGAACCAAATACCGTGGTGAGTTTGAGGAAAGGTTGAAGAAACTGATGGAAGAAATCAAACAAAGTGATGAAATAATACTTTTTATCGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGTGCAATTGATGCTGCTAACATCCTAAAACCAGCTCTAGCAAGAGGTGAACTACAGTGTATTGGAGCCACAACATTGGACGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTACCAGAACCAACTGTGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGTTATGAGATTCACCACAAGCTCCGCTATACCGATGAGGCTCTTGTAGCTGCTGCGCAACTTTCTTACCAGTATATCAGTGATCGATTTCTGCCAGACAAAGCTATAGATTTGATTGATGAAGCTGGCTCACGAGTCCGTCTTCAACATGCTCAGTTGCCAGAAGAGGCAAAAGAACTTGACAAGGAAGTCAGGCAGATTGTCAAGGAGAAAGAGGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAACTGCGTGATAAAGAAATGGATCTAAAGGCACAGATCTCATCAGTTGTAGAGAAAGGCAAGGAGATGAACAAAGCAGAGAGTGAGGCTGGAGATGAAGGTCCTCTTGTAACTGAAGTTGACATACAACATATTGTGTCCTCCTGGACGGGCATACCGGTTGACAAAGTCTCAGCAGATGAATCTGATCGCCTCCTCAAGATGGAAGATACTTTACACAAGAGAATCATTGGCCAGGATGAAGCTGTGAAAGCCATTAGTCGGGCTATCCGTAGAGCCCGGGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATATTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAGCATTGGCTGCATACTACTTCGGCTCTGAAGAGGCCATGATTCGTCTTGACATGAGTGAATTTATGGAAAGGCACACTGTCTCCAAACTTATTGGTTCACCTCCTGGATATGTTGGTTACACCGAAGGTGGTCAATTGACTGAAGCAGTTCGGCGTCGTCCTTACACTGTTGTACTGTTTGATGAGATTGAGAAAGCCCATCCTGATGTTTTCAACATGATGCTACAGATCCTTGAAGACGGAAGACTAACAGACAGTAAGGGAAGAACTGTGGATTTCAAAAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGTGGCCGCAAAATTGGATTCGATCTGGATTATGATGAGAAAGACAGCAGTTATAATAGAATCAAGAGCTTGGTGACTGAGGAGCTAAAACAATACTTTAGGCCAGAGTTTCTAAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAATTGGAGGTGAAGGATATAGCAGACATAATGCTCAAGGAGGTGTTTAAGAGACTGGAGACCAAAGATATTGAACTTCAAGTAACAGAAAGATTTAGGGACAGGGTGGTTGAGGAAGGTTATAATCCTAGTTACGGAGCTAGGCCTCTAAGAAGAGCTATAATGCGGCTTTTGGAGGATAGCATGGCTGAAAAGATGCTTGCTAGAGAGATCAAAGAGGGTGACTCTGTTATAGTAGATGTTGATTCTGACGGGAATGTGATTGTTCTCAATGGTAGCAGCGGAAACCCGGAGTCATTACCAGAGGCTCTTCCTGTATAA 2772 0.4408 MARVLAQPINVPGLVAGHRQNQHKASGKSKRSVKMMCAFRTNRLRMPGFSGLRTFNHLDTMLRPGLDFHSKVSIAISSSRRARATRCIPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEAKELDKEVRQIVKEKEEAVRNQDFEKAGELRDKEMDLKAQISSVVEKGKEMNKAESEAGDEGPLVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKDIADIMLKEVFKRLETKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGNPESLPEALPV 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02602 923 Gene3D - 816 914 - -
Car05g02602 923 Pfam Clp amino terminal domain, pathogenicity island component 107 159 IPR004176 -
Car05g02602 923 Pfam Clp amino terminal domain, pathogenicity island component 183 234 IPR004176 -
Car05g02602 923 SUPERFAMILY Double Clp-N motif 94 235 IPR036628 -
Car05g02602 923 SMART ClpB_D2_small_2 816 906 IPR019489 -
Car05g02602 923 Pfam AAA domain (Cdc48 subfamily) 635 809 IPR003959 GO:0005524|GO:0016887
Car05g02602 923 Gene3D - 588 814 IPR027417 -
Car05g02602 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 530 IPR027417 -
Car05g02602 923 Coils Coil 506 526 - -
Car05g02602 923 Pfam C-terminal, D2-small domain, of ClpB protein 816 896 IPR019489 -
Car05g02602 923 ProSiteProfiles Clp repeat (R) domain profile. 93 235 IPR004176 -
Car05g02602 923 Pfam AAA lid domain 436 538 IPR041546 -
Car05g02602 923 Gene3D - 438 582 - -
Car05g02602 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 640 658 IPR001270 GO:0005524
Car05g02602 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 685 703 IPR001270 GO:0005524
Car05g02602 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 714 732 IPR001270 GO:0005524
Car05g02602 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 747 761 IPR001270 GO:0005524
Car05g02602 923 Coils Coil 347 367 - -
Car05g02602 923 Gene3D - 243 436 IPR027417 -
Car05g02602 923 Gene3D UVR domain 502 566 - -
Car05g02602 923 ProSitePatterns Chaperonins clpA/B signature 1. 388 400 IPR018368 GO:0005524
Car05g02602 923 SMART AAA_5 636 817 IPR003593 -
Car05g02602 923 SMART AAA_5 293 433 IPR003593 -
Car05g02602 923 Gene3D - 92 241 IPR036628 -
Car05g02602 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 903 IPR027417 -
Car05g02602 923 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 76 923 - -
Car05g02602 923 CDD AAA 610 758 - -
Car05g02602 923 ProSitePatterns Chaperonins clpA/B signature 2. 670 688 IPR028299 -
Car05g02602 923 Pfam ATPase family associated with various cellular activities (AAA) 298 414 IPR003959 GO:0005524|GO:0016887
Car05g02602 923 ProSiteProfiles UVR domain profile. 510 545 IPR001943 GO:0005515
Car05g02602 923 CDD AAA 276 428 - -
Car05g02602 923 PANTHER ATP-DEPENDENT CLP PROTEASE 76 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02602 Car-Chr5 71045114 71052277 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02602 K03696 - gmx:100804035 1676.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01213 07 10920974 10926437 Car05g02602 05 71045114 71052277 ECH
Car05g02602 05 71045114 71052277 Car05g02602 05 71045114 71052277 ECH
Car06g00589 06 5951443 5957158 Car05g02602 05 71045114 71052277 PCT