Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car05g02602 | ATGGCTAGGGTTTTGGCTCAGCCAATTAATGTTCCTGGCTTAGTGGCTGGGCACAGGCAAAACCAACACAAGGCATCGGGAAAATCAAAAAGATCAGTCAAAATGATGTGTGCTTTCCGAACAAACAGATTAAGAATGCCAGGTTTCTCAGGACTTCGTACTTTCAATCATTTAGATACTATGCTGAGACCTGGACTAGATTTTCACTCAAAGGTATCAATTGCAATTTCTTCTTCACGGCGAGCAAGGGCTACCAGATGCATACCCAAAGCCATGTTTGAGCGTTTCACAGAGAAAGCAATCAAAGTGATAATGCTAGCTCAGGAGGAAGCAAGACGTCTTGGTCACAATTTTGTTGGAACAGAGCAGATTCTCTTGGGTCTTATTGGTGAAGGCACTGGTATCGCCGCCAAGGTTTTAAAGTCTATGGGAATCAACCTTAAAGATGCACGTGTGGAAGTGGAGAAGATAATTGGAAGGGGTAGTGGGTTTGTTGCTGTTGAGATTCCGTTTACTCCCCGTGCAAAGCGTGTTTTGGAACTTTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCAGAGCACTTGCTTCTAGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAACCTAGGCGCTGATCCTACTAATATTCGCACACAGGTTATTCGCATGGTGGGTGAGAGTGCTGACAGTGTAACTGCTACTGTTGGCTCTGGAAGTAGTAACAATAAGATGCCAACTTTGGAGGAGTATGGTACCAATTTGACAAAGTTAGCAGAAGAGGGAAAGTTGGATCCTGTTGTGGGAAGGCAGCCACAAATTGAACGTGTCACCCAAATTTTAGGCCGGCGCACCAAAAATAATCCTTGTCTTATTGGCGAACCTGGTGTTGGCAAGACCGCAATTGCCGAAGGTCTTGCTCAGCGGATTGCAAATGGTGATGTACCTGAAACTATTGAGGGAAAAAAGGTTATAACCCTTGACATGGGTCTGCTTGTAGCTGGAACCAAATACCGTGGTGAGTTTGAGGAAAGGTTGAAGAAACTGATGGAAGAAATCAAACAAAGTGATGAAATAATACTTTTTATCGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGTGCAATTGATGCTGCTAACATCCTAAAACCAGCTCTAGCAAGAGGTGAACTACAGTGTATTGGAGCCACAACATTGGACGAATACAGGAAGCACATTGAAAAAGATCCAGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTACCAGAACCAACTGTGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGTTATGAGATTCACCACAAGCTCCGCTATACCGATGAGGCTCTTGTAGCTGCTGCGCAACTTTCTTACCAGTATATCAGTGATCGATTTCTGCCAGACAAAGCTATAGATTTGATTGATGAAGCTGGCTCACGAGTCCGTCTTCAACATGCTCAGTTGCCAGAAGAGGCAAAAGAACTTGACAAGGAAGTCAGGCAGATTGTCAAGGAGAAAGAGGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAACTGCGTGATAAAGAAATGGATCTAAAGGCACAGATCTCATCAGTTGTAGAGAAAGGCAAGGAGATGAACAAAGCAGAGAGTGAGGCTGGAGATGAAGGTCCTCTTGTAACTGAAGTTGACATACAACATATTGTGTCCTCCTGGACGGGCATACCGGTTGACAAAGTCTCAGCAGATGAATCTGATCGCCTCCTCAAGATGGAAGATACTTTACACAAGAGAATCATTGGCCAGGATGAAGCTGTGAAAGCCATTAGTCGGGCTATCCGTAGAGCCCGGGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATATTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAGCATTGGCTGCATACTACTTCGGCTCTGAAGAGGCCATGATTCGTCTTGACATGAGTGAATTTATGGAAAGGCACACTGTCTCCAAACTTATTGGTTCACCTCCTGGATATGTTGGTTACACCGAAGGTGGTCAATTGACTGAAGCAGTTCGGCGTCGTCCTTACACTGTTGTACTGTTTGATGAGATTGAGAAAGCCCATCCTGATGTTTTCAACATGATGCTACAGATCCTTGAAGACGGAAGACTAACAGACAGTAAGGGAAGAACTGTGGATTTCAAAAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGTGGCCGCAAAATTGGATTCGATCTGGATTATGATGAGAAAGACAGCAGTTATAATAGAATCAAGAGCTTGGTGACTGAGGAGCTAAAACAATACTTTAGGCCAGAGTTTCTAAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAATTGGAGGTGAAGGATATAGCAGACATAATGCTCAAGGAGGTGTTTAAGAGACTGGAGACCAAAGATATTGAACTTCAAGTAACAGAAAGATTTAGGGACAGGGTGGTTGAGGAAGGTTATAATCCTAGTTACGGAGCTAGGCCTCTAAGAAGAGCTATAATGCGGCTTTTGGAGGATAGCATGGCTGAAAAGATGCTTGCTAGAGAGATCAAAGAGGGTGACTCTGTTATAGTAGATGTTGATTCTGACGGGAATGTGATTGTTCTCAATGGTAGCAGCGGAAACCCGGAGTCATTACCAGAGGCTCTTCCTGTATAA | 2772 | 0.4408 | MARVLAQPINVPGLVAGHRQNQHKASGKSKRSVKMMCAFRTNRLRMPGFSGLRTFNHLDTMLRPGLDFHSKVSIAISSSRRARATRCIPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEAKELDKEVRQIVKEKEEAVRNQDFEKAGELRDKEMDLKAQISSVVEKGKEMNKAESEAGDEGPLVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKDIADIMLKEVFKRLETKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGNPESLPEALPV | 923 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car05g02602 | 923 | Gene3D | - | 816 | 914 | - | - | |
Car05g02602 | 923 | Pfam | Clp amino terminal domain, pathogenicity island component | 107 | 159 | IPR004176 | - | |
Car05g02602 | 923 | Pfam | Clp amino terminal domain, pathogenicity island component | 183 | 234 | IPR004176 | - | |
Car05g02602 | 923 | SUPERFAMILY | Double Clp-N motif | 94 | 235 | IPR036628 | - | |
Car05g02602 | 923 | SMART | ClpB_D2_small_2 | 816 | 906 | IPR019489 | - | |
Car05g02602 | 923 | Pfam | AAA domain (Cdc48 subfamily) | 635 | 809 | IPR003959 | GO:0005524|GO:0016887 | |
Car05g02602 | 923 | Gene3D | - | 588 | 814 | IPR027417 | - | |
Car05g02602 | 923 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 253 | 530 | IPR027417 | - | |
Car05g02602 | 923 | Coils | Coil | 506 | 526 | - | - | |
Car05g02602 | 923 | Pfam | C-terminal, D2-small domain, of ClpB protein | 816 | 896 | IPR019489 | - | |
Car05g02602 | 923 | ProSiteProfiles | Clp repeat (R) domain profile. | 93 | 235 | IPR004176 | - | |
Car05g02602 | 923 | Pfam | AAA lid domain | 436 | 538 | IPR041546 | - | |
Car05g02602 | 923 | Gene3D | - | 438 | 582 | - | - | |
Car05g02602 | 923 | PRINTS | ATP-dependent Clp protease ATP-binding subunit signature | 640 | 658 | IPR001270 | GO:0005524 | |
Car05g02602 | 923 | PRINTS | ATP-dependent Clp protease ATP-binding subunit signature | 685 | 703 | IPR001270 | GO:0005524 | |
Car05g02602 | 923 | PRINTS | ATP-dependent Clp protease ATP-binding subunit signature | 714 | 732 | IPR001270 | GO:0005524 | |
Car05g02602 | 923 | PRINTS | ATP-dependent Clp protease ATP-binding subunit signature | 747 | 761 | IPR001270 | GO:0005524 | |
Car05g02602 | 923 | Coils | Coil | 347 | 367 | - | - | |
Car05g02602 | 923 | Gene3D | - | 243 | 436 | IPR027417 | - | |
Car05g02602 | 923 | Gene3D | UVR domain | 502 | 566 | - | - | |
Car05g02602 | 923 | ProSitePatterns | Chaperonins clpA/B signature 1. | 388 | 400 | IPR018368 | GO:0005524 | |
Car05g02602 | 923 | SMART | AAA_5 | 636 | 817 | IPR003593 | - | |
Car05g02602 | 923 | SMART | AAA_5 | 293 | 433 | IPR003593 | - | |
Car05g02602 | 923 | Gene3D | - | 92 | 241 | IPR036628 | - | |
Car05g02602 | 923 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 585 | 903 | IPR027417 | - | |
Car05g02602 | 923 | PANTHER | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC | 76 | 923 | - | - | |
Car05g02602 | 923 | CDD | AAA | 610 | 758 | - | - | |
Car05g02602 | 923 | ProSitePatterns | Chaperonins clpA/B signature 2. | 670 | 688 | IPR028299 | - | |
Car05g02602 | 923 | Pfam | ATPase family associated with various cellular activities (AAA) | 298 | 414 | IPR003959 | GO:0005524|GO:0016887 | |
Car05g02602 | 923 | ProSiteProfiles | UVR domain profile. | 510 | 545 | IPR001943 | GO:0005515 | |
Car05g02602 | 923 | CDD | AAA | 276 | 428 | - | - | |
Car05g02602 | 923 | PANTHER | ATP-DEPENDENT CLP PROTEASE | 76 | 923 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car05g02602 | Car-Chr5 | 71045114 | 71052277 | Dispersed/Wgd |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car05g02602 | K03696 | - | gmx:100804035 | 1676.37 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Car07g01213 | 07 | 10920974 | 10926437 | Car05g02602 | 05 | 71045114 | 71052277 | ECH | |
Car05g02602 | 05 | 71045114 | 71052277 | Car05g02602 | 05 | 71045114 | 71052277 | ECH | |
Car06g00589 | 06 | 5951443 | 5957158 | Car05g02602 | 05 | 71045114 | 71052277 | PCT |