Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02600 ATGATGTCCAGAATGAACAACAACAATAATGCTTGGATTCAAGAAGAAGAAAACAACAACACTAATACTTCACCTTCTTCATGGCCCACAAACCCAAATTCAAACCCTAACACTCCTTCATCACCTTCACCTTTTCTTCAAAACTTCTCTTCTTTCAAACCCATGCTTGAAATGGATCATGAAGAAGAATGGTACATGATGAAAGACATGGCTTTTTCACCTAACTTAGATAACGTTCTTCTCCAAACCGTTGATTCCGTTTCTTCCTCTTCATGTTCTCCTTCTTCCTCCATTTTCAACACCCTCGACCCTTCACCATCACACCTTCAGCAGTATTTTCTCTCTCCAAATCATAAACCTATGAACAACGTTTCTTCTCTTCTcaacaataacaacaacaacaacaacaacCCTTTTGATATCCCTTGTGAAGTTGGTTTTCTTGATCCTCAAGCTTCATCTGTAGCTTCTTCGCTTCTGGGTAGTTTTGTTGATTTCAGTTCCAAAACCCATTTGAGCTTGCCCCATTTGCCTCAAAACAAAGCCAACTTCATGGGATTTCAGAACTCTGAAGAGGGTTCTGGAAAGTCGGTTTTTTTGAACCGGTCCAAGATTTTGAGACCGCTTGATTCTTTGCCACCTTCTGGAACACAACCTACTCTGTTTCAGAAGAGAGCAGCACTGAGAAAAAACATGGGATTGGAAATTGGTGGTGGTGGGAGTAGGAGCAAGTGTGGAATTAGTGAAGGGAGTGATAAGAAAAGGAAATTCAGTGGTGGGGATGAGATTGAAGATTTGAGTTTTGATGGGTCTGGTTTGAACTATGATTCTGATGATTTGACTGAGAGTAACTATAATAATGGTAAGATGGAAGAGAGTAATGTGAAAAATTGTGGAAATGCTTCCAATGGTAACAGCACTGTCACTGGTGGTGTTGATCAGAAAGGGAAGAAGAAAGGAATGCCTGCTAAGAATTTGATGGCTGAACGTCGCCGGAGGAAGAAGCTCAATGATAGACTCTATATGCTTAGGTCCGTTGTTCCAAAGATTAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAACTTCTGCAAAGGATCAATGATCTTCATAACGAGTTGGAGTCGACACCTGCTGGCTCTTCATTGACACCTGTTTCAAGCTTTCATCCTTTGACACCGACTCCACCTTCGTTGCCGAGCCGTATCAAAGAAGAACTATGCCATAGCTCATTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGGGAAGGAAGGGCTGTAAATATCCACATGTTTTGCGCCCGCAAACCTGGTCTGTTGCTTTCAACCATGAGGGCTTTGGATAACCTTGGGTTAGACATTCAGCAAGCTGTTATAAGCTGTTTCAATGGATTTGTTATGGATATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAAGATGTTCATCCGGAGCAAATCAAAGCAGTACTCATGGATTCAGCTGGCTTCAATGGAATGATCTAA 1536 0.4167 MMSRMNNNNNAWIQEEENNNTNTSPSSWPTNPNSNPNTPSSPSPFLQNFSSFKPMLEMDHEEEWYMMKDMAFSPNLDNVLLQTVDSVSSSSCSPSSSIFNTLDPSPSHLQQYFLSPNHKPMNNVSSLLNNNNNNNNNPFDIPCEVGFLDPQASSVASSLLGSFVDFSSKTHLSLPHLPQNKANFMGFQNSEEGSGKSVFLNRSKILRPLDSLPPSGTQPTLFQKRAALRKNMGLEIGGGGSRSKCGISEGSDKKRKFSGGDEIEDLSFDGSGLNYDSDDLTESNYNNGKMEESNVKNCGNASNGNSTVTGGVDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPVSSFHPLTPTPPSLPSRIKEELCHSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFVMDIFRAEQCKEGQDVHPEQIKAVLMDSAGFNGMI 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02600 511 Pfam Helix-loop-helix DNA-binding domain 327 369 IPR011598 GO:0046983
Car05g02600 511 MobiDBLite consensus disorder prediction 317 333 - -
Car05g02600 511 MobiDBLite consensus disorder prediction 274 312 - -
Car05g02600 511 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 388 IPR036638 GO:0046983
Car05g02600 511 CDD ACT_UUR-ACR-like 440 500 - -
Car05g02600 511 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 369 IPR011598 GO:0046983
Car05g02600 511 SMART finulus 326 375 IPR011598 GO:0046983
Car05g02600 511 Coils Coil 359 383 - -
Car05g02600 511 MobiDBLite consensus disorder prediction 247 263 - -
Car05g02600 511 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 92 511 - -
Car05g02600 511 CDD bHLH_AtAMS_like 323 388 - -
Car05g02600 511 MobiDBLite consensus disorder prediction 234 333 - -
Car05g02600 511 PANTHER BHLH TRANSCRIPTIONAL FACTOR 92 511 - -
Car05g02600 511 MobiDBLite consensus disorder prediction 17 48 - -
Car05g02600 511 Gene3D - 313 384 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02600 Car-Chr5 71028171 71030959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02600 50 484 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 52.553 3.48e-121 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g02600 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02600 - - vra:106778861 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02600 05 71028171 71030959 Car05g02600 05 71028171 71030959 ECH