Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02596 ATGCCTTTTGAAGTAACGAACCAGAGGGGTGTTACTGCTTCATCCCACCTTTATGATGATGTTTCCTATGCTTCTGAGAGGAATGTTGGACTACGGAACCCAAAATCCATCCATGATGATTATCCACAAGGAAAGAGTGAAATGGCAGCTTCACATGGAAGCATTTTGAATGCTTCATCAACTCTCGAAAGAAATGCAAAAACAGGCTTGCCAATGTCACAGACCGGTCTATCTAGGGAAATTCCAGAAAACCTACATTTTGGTGGGGAAGCTGGCATTGTAGATTTGCTGAAGGATTCAAAGGAATCCCCAAATTTTCATCCAAGATCATGGTCTGATGTGCATAGGCAGCCAGCATCTAGCTCGTATGGTTTAATTGGGAACAAGATTGTCACCAATGCGGGTTCACGTGAAAGTAGTCTATTCTCAAGCTCACTGTCTGACTTATTTAGCCAAAAGTTGAGATTATTGGGAAACGGTGTTCTGTCTGATCAGAACATTACTGCTGGTTCTCTTCATGAGGAAGAACCATACAAATCGCTTGAAGAAATTGAGGCTGACACTATAGGGGATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGCGTCACTGATGATTTAGGAAACAGTACTCATGCAAGAACAAGTGATGATTTTGAAGATTTTGATTTGTTTAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGAACTTCTAGTTTCAGGAAAAAGAATCAATGGTTTGGATGGAGATCCTGGTTACTTTGGGGGTTCTAAAGGCAAAAGTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTCAGAAACATTATCAGCAATGTAGAAGACTCAGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATACGAACCATTTATACTGCCTGCAAGCATCGTGGGTTTGTTATGGTTTCTTATTATGACCTAAGGGCAGCACAAAATGCAATGAAAGCCCTTCAAAATAGGTCATTGAGATCTAGGAAACTCGATATACACTATTCAATTCCAAAGGGCAATGTTTCAGAGAAGGATATTGGCCATGGCACACTGATGATATCTGCTCTTGATCCATCTGTTTTGAATGATGAGCTAAAACATATTTTTGGGTTTTATGGAGAAATCAAAGAAATCTATGAATATCCAGAAATGAATCATATCAAATATATTGAATTTTATGATGCTCGAAGTGCGGAAGCTTCTCTCCGTGCATTGAATGGAATCTGCATTGCTGGGAAGCACATCAAGCTTGAACCTGGCCATCCTAGGATTGCAACAAGTATGATGCAGCCGTCTCAAAAGGGACAAGATGAAGCCGATCTTGGTCATAATCTCAATGACATCTTATTCTTAAGACAGAAGGGAGTGTCTTCTGGAGTTATTGCATCTGGTGGTCGATTGGAAAATGGATACAATCAAAGATTTCAATCTGCATCACAGCTGCCTTTGAATGCTTTCATTGATAACACATTTTCTCACGTGAATTCTAACATTTCCAAGACTGCGAGAGGGGCATATGCTGGAAAAGTATCTGGTGTTTGTGAGTCTAGTAACATTGCTGATGCAATGAAATTTGCTTCCATTCCAAGATTCCACCCTCATTCTTTACCCGAGTATCGTGATGGTTTAGCTAATGGTAGTCCTTACAATTTGTCAAACACCATTAAAATGGCCGCCAATATTGGAACTGGATCCACAGAAGCATCTGACAGCAGGCACATTCAGGGAATGAGCTCCACTGGGAACTTATCAGAATTTAATGCAGGAGGAAATGGAAGCCTTCCCAACCATCAGCTCTATCATATGTGGAACAGCTCAAACTTGCGTCAGCAATCTCCATCAAATGCCGTGGTTTGGCAGAAAACACCATCTTTTGCTAATGGTGCTTGTGCTCCATGTCTTCCGCAGATGCCCAGCTTTCCCAGGTCACCGGCTCATGTGCTGAGAGCATCACACATAGACCACCATGTTGGATCAGCACCTGTTGTTACAGGATCACTCTGGGAAAGACAACATTCTTACTTGGGAGAGTCTCCTGATGCTTCTGGTTTTAGATTGGGTTCTCTAGGCAATGCAGGTTTCCATGGTAGCTGGCAGTTGCATCCTCCGGATCTTTCTTGCAACATGTTTTCTCATGTTGGTGGGAATGGTAACGAATTGACATCCAGTGTTGGGCAGGGTTCTCCTAAGCAGTTGTCACATGTCTTCCCTGGGAGACTTCCCATGACTTCAATGTCAAAATTTGATTCTACCAACGAACGAATGAGAAATCTCTATCACCGTAGAAGTGAAGCAAACATTAACAGTGCTGATAAAAAACAATATGAACTCGACCTAGGCCGCATATTGCGCGGGGATGACAGCCGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTACAGCCATAGACGAACAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGACTGATCCTGGTCAAATAATTCCATTTCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCTGTACTTGCATATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAACGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGTCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTGCCAATATTAGAGTAAGGCTGGGAAAATCTCGTAACAGTGGCAATGAGGAGAACCGCAGTCAAGGGAATTCTTCAACTTTGGCAAGTGCGGAAGAGTTTGCTAGTGGAATAGATTCTTCAACGTGTTCTTCAAGAGACACTGACTAA 2916 0.418 MPFEVTNQRGVTASSHLYDDVSYASERNVGLRNPKSIHDDYPQGKSEMAASHGSILNASSTLERNAKTGLPMSQTGLSREIPENLHFGGEAGIVDLLKDSKESPNFHPRSWSDVHRQPASSSYGLIGNKIVTNAGSRESSLFSSSLSDLFSQKLRLLGNGVLSDQNITAGSLHEEEPYKSLEEIEADTIGDLLPDEDDLFSGVTDDLGNSTHARTSDDFEDFDLFSSGGGMELEGDELLVSGKRINGLDGDPGYFGGSKGKSPFGEQSSRTLFVRNIISNVEDSELKALFEQYGDIRTIYTACKHRGFVMVSYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNVSEKDIGHGTLMISALDPSVLNDELKHIFGFYGEIKEIYEYPEMNHIKYIEFYDARSAEASLRALNGICIAGKHIKLEPGHPRIATSMMQPSQKGQDEADLGHNLNDILFLRQKGVSSGVIASGGRLENGYNQRFQSASQLPLNAFIDNTFSHVNSNISKTARGAYAGKVSGVCESSNIADAMKFASIPRFHPHSLPEYRDGLANGSPYNLSNTIKMAANIGTGSTEASDSRHIQGMSSTGNLSEFNAGGNGSLPNHQLYHMWNSSNLRQQSPSNAVVWQKTPSFANGACAPCLPQMPSFPRSPAHVLRASHIDHHVGSAPVVTGSLWERQHSYLGESPDASGFRLGSLGNAGFHGSWQLHPPDLSCNMFSHVGGNGNELTSSVGQGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNLYHRRSEANINSADKKQYELDLGRILRGDDSRTTLMIKNIPNKYTSKMLLTAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIIPFHQAFNGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANIRVRLGKSRNSGNEENRSQGNSSTLASAEEFASGIDSSTCSSRDTD 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02596 971 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 971 - -
Car05g02596 971 SUPERFAMILY RNA-binding domain, RBD 797 882 IPR035979 GO:0003676
Car05g02596 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Car05g02596 971 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Car05g02596 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Car05g02596 971 SUPERFAMILY RNA-binding domain, RBD 267 426 IPR035979 GO:0003676
Car05g02596 971 Gene3D - 352 447 IPR012677 -
Car05g02596 971 CDD RRM1_MEI2_like 269 344 IPR034453 -
Car05g02596 971 Pfam RNA recognition motif 2 795 891 IPR007201 -
Car05g02596 971 SMART rrm1_1 271 339 IPR000504 GO:0003723
Car05g02596 971 SMART rrm1_1 356 424 IPR000504 GO:0003723
Car05g02596 971 SMART rrm1_1 797 875 IPR000504 GO:0003723
Car05g02596 971 MobiDBLite consensus disorder prediction 932 971 - -
Car05g02596 971 MobiDBLite consensus disorder prediction 937 971 - -
Car05g02596 971 Gene3D - 262 351 IPR012677 -
Car05g02596 971 CDD RRM3_MEI2_like 798 883 IPR034454 -
Car05g02596 971 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Car05g02596 971 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 971 - -
Car05g02596 971 Gene3D - 789 881 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02596 Car-Chr5 70979321 70987503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02596 265 421 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 2.79e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02596 - - aprc:113865455 1519.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02596 05 70979321 70987503 Car05g02596 05 70979321 70987503 ECH