Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02543 ATGGGAGACGGTAACCGCTCCAACAGCAATAAGCCAGAGTGGCTTCTGCAGTACGATCTGATTGGGAAGATCGGAGAAGGAACGTACGGTCTCGTTTTCCTCGCTCGAATCAAGTCTCCTACAAATCGCGGAAAATCTATCGCCATAAAAAAATTCAAGCAATCTAAAGACGGCGATGGTGTCTCTCCCACCGCCATACGTGAAATCATGTTGCTGAGGGAGATAACACACGAAAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATACGGACATGTCACTGTATCTAGCTTTTGATTATGCTGAACATGACCTTTATGAAATAATAAGGCATCATAGAGACAAGGTCAACCAATCAATCAACCAGTACACTGTTAAATCGTTACTGTGGCAGTTGCTCAATGGACTGAACTATCTGCACAGTAATTGGATAATACATCGAGATTTGAAGCCATCAAATATATTGGTTATGGGCGATGGGGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGGCTTGCAAGGATATATCAAGCCCCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATATTTGCTGAATTGTTGACCTTGAAGCCACTATTTCAAGGTGCAGAAGTCAAAGCTACACCAAATCCTTTTCAGCTTGATCAACTTGACAAGATATTCAAAGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTCCCCCATTGGCAACAAGATTCGCAACATATACAAGGACACAAATATGACAATGCTAATCTCTATAGTGTTGTACACCTATCTCCAAAAAGTCCTGCATACGACCTTTTGTCGAAGATGCTCGAATATGATCCTCGAAGGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATGGAACCGCAACCTGGGCGGAATGCACTTGTGCCATGCACCCCTGGAGAGGCATTTGTGAATTATCCCACACGTCCGGTGGACACAACTACAGATTTTGAAGGGACAACCAACATGCAGCAATCACAGCAGGTTCCGTCTGGAGCTGCTATTGCTGGCAACATGCCTGGTGGTCATGTATCAAATAGATCTGTCCCTCGACCAATGAATGTTGGCATGCAAAGAATGCATCAGCTGCAAGCTTATAATCTCACATCCCAGGCAGGGATGGGAGGTGGAATTAATCCTGGTGGCATCCCAATGCAACGAGGTGTTCCACAACAGGCCCATCAACAGCAACAGTTGAGGAGAAAAGACCAAATGGGGATGCCAGGATACCCTCCACAGCAGAAATCAAGACGTATGTAA 1395 0.443 MGDGNRSNSNKPEWLLQYDLIGKIGEGTYGLVFLARIKSPTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHTDMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGDGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDSQHIQGHKYDNANLYSVVHLSPKSPAYDLLSKMLEYDPRRRITAAQALEHEYFKMEPQPGRNALVPCTPGEAFVNYPTRPVDTTTDFEGTTNMQQSQQVPSGAAIAGNMPGGHVSNRSVPRPMNVGMQRMHQLQAYNLTSQAGMGGGINPGGIPMQRGVPQQAHQQQQLRRKDQMGMPGYPPQQKSRRM 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02543 464 CDD STKc_CDK8_like 17 328 - -
Car05g02543 464 Gene3D Phosphorylase Kinase; domain 1 5 100 - -
Car05g02543 464 Gene3D Transferase(Phosphotransferase) domain 1 101 342 - -
Car05g02543 464 MobiDBLite consensus disorder prediction 419 464 - -
Car05g02543 464 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Car05g02543 464 SUPERFAMILY Protein kinase-like (PK-like) 17 330 IPR011009 -
Car05g02543 464 ProSiteProfiles Protein kinase domain profile. 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02543 464 SMART serkin_6 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02543 464 PANTHER CELL DIVISION PROTEIN KINASE 7 463 - -
Car05g02543 464 Pfam Protein kinase domain 18 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g02543 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Car05g02543 464 PANTHER CYCLIN-DEPENDENT KINASE E-1 7 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02543 Car-Chr5 70502192 70512871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02543 1 464 Core Cell Cycle Gene Families AT5G63610 75.365 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Car05g02543 Pkinase 1.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02543 K02208 - gmx:100813433 837.795