Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02539 ATGAAGGGTGAATTAGAGTTACCTCCTGGTTTCAGATTTCACCCCACCGATGAAGAATTGGTGAACCACTACTTGTGTAGGAAATGTGCTGGTCAATCAATCTCCGTTCCGGTAGTCAAAGAAATCGATTTGTACAAGTTTGATCCATGGCAGCTTCCGGAAATAGGTTTCCAAAGCGAGAAAGAATGGTACTTCTTCTCTCCAAGGGACAGGAAATACCCAAACGGTTCTCGGCCGAACCGGGCGGCCGGAAGCGGTTATTGGAAAGCTACCGGAGCCGATAAACCGATCGGGAAACCGAAGGCGATGGGGATTAAAAAAGCACTGGTGTTCTACGCTGGAAAAGCTCCCAAAGGAGTTAAAACTAATTGGATTATGCATGAATATCGTCTCGCTAATGTTGATAGATCAGCCGGCAAGAAAAACAACTTGAGGCTTGATGATTGGGTATTGTGTAGAATTTACAACAAGAAAGGGAAGATTGAAAAATACAACACGGTAACACCAAAGGTTGATAGTTTTTATGATCATGAAGAACATGAGAGGAAGCCAGAAATTGACAAGTTAGGGAATTATCAATTGTACATGGACTCGTCGGATTCAATTCCAAGGCTGCATACGGACTCGTGTAGCTCAGGTCACGTGGTTTCACCGGATGTCACGTGCGATAAAGAGGTGCAGAGTGAGGTTAAATGGAATGAATTTGGGTTACAGCTGGATGACGCGTTTGATTTTGAATTGAATTCTTTGTTGGATACTAGTAACCTTTCGTTGGATCTTGATGGCCCTTTTGGGACCAATTTTGAGTACCAAATGAACCACCTCTCGCCGTTACAGGACATGTTCATGTACCCAAACAAGCCATTTTGA 870 0.4368 MKGELELPPGFRFHPTDEELVNHYLCRKCAGQSISVPVVKEIDLYKFDPWQLPEIGFQSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKAMGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGKIEKYNTVTPKVDSFYDHEEHERKPEIDKLGNYQLYMDSSDSIPRLHTDSCSSGHVVSPDVTCDKEVQSEVKWNEFGLQLDDAFDFELNSLLDTSNLSLDLDGPFGTNFEYQMNHLSPLQDMFMYPNKPF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02539 289 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Car05g02539 289 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Car05g02539 289 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 249 - -
Car05g02539 289 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Car05g02539 289 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Car05g02539 289 PANTHER NAC TRANSCRIPTION FACTOR 56 5 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02539 Car-Chr5 70481392 70483138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02539 1 289 NAC Transcription Factor Family AT1G01720 60.596 1.47e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car05g02539 NAM 2.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02539 - - gmx:100779770 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02539 05 70481392 70483138 Car05g02539 05 70481392 70483138 ECH