Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02519 ATGAACAAAAACACCTCACGGAAGCGTGCGGCGGCGGCACCGGCACCGCCGCAACAACCACCGACGAAACAGGCACTGTCTCAGGAAGACGAGTTTCTCGACGAAGACGTGTTCCTGGACGAAACCCTCATTTCGGAAGACGAAGAGTCCGCAATTCTCCGTGACATCGAGCAACGCCAGGCCCTAGCTACTCGTCTCTCAAAGTGGACTCGTCCTCCACTCTCCCAGGACTATATCTCCCAATCTCGTAGCATTCtttttcAGCAGCTAGAGATTGATTATGTGATTGGAGAGAGTCATAAAGAATTGCTACCGAACTCGTCTGGACCTGCTGCCATAATTAGAATATTTGGAGTAACCAAGGAAGGACACAGTGTTTGCTGCAAGGTTCATGGTTTTGAACCATATTTTTACATCAGCTGCCCTCCTGGAATGGGACCAGATGATATCTCTCATTTTCATCAAATCCTCGAGGCAAGGATGAGAGAAGCCAATAGAAACAGTAATGTAGGAAAATTTGTTCGTCGTATTGAAATGGTGCAGAGAAGGAGCATCATGTATTATCAGCAAATAAATTCCCATCCCTTTCTCAAAATTGTGGTTGCACTCCCAACAATGGTTGCTAGCTGTCGTGGTATTCTTGATAGAGGTATTCAGCTTGATGGTCTTGGCATGAAAAACTTCATGACTTATGAAAGCAATGTACTTTTTGCTCTTCGTTTCATGATTGATTGCAACATAAAGACAACAAAAAGCTTGTCTTACTGCCAGTTAGAGTTTGATTGCTTGTATTCCGACTTGATTAGTCATGCACCAGAAGGGGAATATTCAAAGATGGCTCCATTTCGCATTTTGAGTTTTGACATTGAGTGTGCTGGTCGAAAAGGTCATTTTCCTGAGCCTACCCATGATCCTGTTATCCAGATTGCTAATCTAGTAACTTTACAAGGAGAAGGCCAGCCATTAATTCGCAACGTGATGACCCTTAAATCATGTTCCCCTATTGTTGGTGTTGATGTAATGTCATTTGATACAGAAAGAGAAGTCCTGCTTGCTTGGAGGGATTTCATCCGTGAAGTAGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGATTTGCCGTATCTTATTGAGAGAGCTGCGGCCCTTAAAATAGCAGAATTTCCAATTTTGGGCCGTATCAGAAACAGTAGAGTTCGAGTAAAAGATACAACTTTTTCATCAAGGCAGTATGGGACCAGGGAAAGTAAAGAAGTTACAGTAGAAGGAAGAGTTCAGTTTGATTTGCTCCAGGTTATGCAAAGAGACTACAAGCTAAGTTCCTATTCATTGAATTCTGTGTCAGCACACTTTCTTTCTGAGCAGAAAGAGGATGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGAAACTAGAAGGCGCCTTGCTGTCTATTGCTTGAAGGATGCATATCTCCCCCAGCGGCTTTTGGATAAATTGATGTTCGTTTACAATTATGTGGAGATGGCTCGAGTAACAGGTGTCCCGATTTCCTTTCTACTTTCCAGGGGCCAAAGCATCAAGGTGCTTTCTCAACTTCTTAGGAAGGCAAAACAAAAAAATCTAGTCATTCCTAATGCCAAGCAGGCAGGGTCAGAACAAGGAACATTTGAAGGTGCCACTGTATTGGAGGCTAAGGCTGGATTTTATGAAAAGCCAATTGCTACTTTAGATTTTGCATCCTTGTATCCGTCTATTATGATGGCATATAATCTATGTTATTGTACACTGGTGACCCCTGAAAATGCTCGTAAGCTCAACATCCCTCCGGAGTCAGTGAACAGAACTCCATCTGGTGAAACATTTGTTAAACCAAATTTACAGAAGGGCATACTTCCTGAAATTCTTGAAGAGCTATTAGCAGCTCGTAAAAGGGCAAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTTGAGAAAGCCGTTCTAGATGGCAGGCAGTTGGCCCTAAAGATTAGTGCAAATTCTGTGTATGGGTTTACAGGGGCAACTATTGGTCAATTACCTTGCTTAGAGATATCATCAAGTGTAACTAGCTATGGTCGACAAATGATCGAGCACACTAAAAAGCTTGTGGAAGATAAATTTACAACGCTTAATGGCTACCAACACACTGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGTTTCTGCTGTAGAAGAGGCTATGAGTTTGGGGAGAGAAGCTGCTGAATATATCAGTGGAACTTTCACAAAACCTATCAAACTAGAGTTCGAGAAGATTTACTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCGGACAATTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGCTTGTTGGTCAAAAACTTGGTAAACGACTGTCTTCACAAAATACTGATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAACCGGATGGATTTATCACTCCTGGTTATTACGAAGGGTTTGACAAAGACAGGAGATGATTATGAAGTAAAGACAGCTCATGTTGAACTTGCTGAAAGGATGCGTAAGCGAGATGCTGCTACTGCTCCAAATGTTGGAGACAGAGTACCTTATGTTATTATTAAAGCTGCCAAAGGTGCCAAGGCTTATGAGAAATCAGAGGATCCTATCTATGTGCTCGAGAACAACATACCGATAGATCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTAAGAATTTTTGAGCCAATTCTGAAGAATGCTAGCAAGGAACTTCTCCACGGAAGCCACACACGATCTATTTCTATTTCTACTCCGTCAAACAGCGGTATAATGAGATTTGCCCAGAAACAGTATACTTGTATTGGTTGCAAAGCTTTACTTAGCAAAGGAGATCGCACTCTTTGTGCACATTGCAAAGGAAGGGAAGCCGAATTGTACTGTAAAACAGTGGCTCAAGTTTCGGACCTAGAGATACTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGGGATTGCCCAATTTTTTATCGACGCAAAAAGGCACAGAAAGATATGGCTGAAGCAAGGTTGCAATTGGACAGATGGAACTTCTAA 3222 0.4187 MNKNTSRKRAAAAPAPPQQPPTKQALSQEDEFLDEDVFLDETLISEDEESAILRDIEQRQALATRLSKWTRPPLSQDYISQSRSILFQQLEIDYVIGESHKELLPNSSGPAAIIRIFGVTKEGHSVCCKVHGFEPYFYISCPPGMGPDDISHFHQILEARMREANRNSNVGKFVRRIEMVQRRSIMYYQQINSHPFLKIVVALPTMVASCRGILDRGIQLDGLGMKNFMTYESNVLFALRFMIDCNIKTTKSLSYCQLEFDCLYSDLISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEGQPLIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAAALKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFVYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEAKAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPENARKLNIPPESVNRTPSGETFVKPNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYQHTAEVIYGDTDSVMVQFGVSAVEEAMSLGREAAEYISGTFTKPIKLEFEKIYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKTAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMRFAQKQYTCIGCKALLSKGDRTLCAHCKGREAELYCKTVAQVSDLEILFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQLDRWNF 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02519 1073 SMART polmehr3 280 739 IPR006172 GO:0000166|GO:0003676|GO:0003887
Car05g02519 1073 Pfam C4-type zinc-finger of DNA polymerase delta 983 1054 IPR025687 -
Car05g02519 1073 Pfam DNA polymerase family B 513 946 IPR006134 GO:0000166|GO:0003677
Car05g02519 1073 PRINTS DNA-directed DNA-polymerase family B signature 664 676 IPR006172 GO:0000166|GO:0003676|GO:0003887
Car05g02519 1073 PRINTS DNA-directed DNA-polymerase family B signature 572 585 IPR006172 GO:0000166|GO:0003676|GO:0003887
Car05g02519 1073 PRINTS DNA-directed DNA-polymerase family B signature 725 733 IPR006172 GO:0000166|GO:0003676|GO:0003887
Car05g02519 1073 TIGRFAM pol2: DNA polymerase (pol2) 548 944 - -
Car05g02519 1073 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 83 1073 - -
Car05g02519 1073 MobiDBLite consensus disorder prediction 1 28 - -
Car05g02519 1073 CDD POLBc_delta 554 947 - -
Car05g02519 1073 SUPERFAMILY DNA/RNA polymerases 538 948 IPR043502 -
Car05g02519 1073 CDD DNA_polB_delta_exo 276 505 - -
Car05g02519 1073 Pfam DNA polymerase family B, exonuclease domain 120 449 IPR006133 -
Car05g02519 1073 SUPERFAMILY Ribonuclease H-like 111 519 IPR012337 -
Car05g02519 1073 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 83 1073 - -
Car05g02519 1073 Gene3D - 801 956 IPR042087 -
Car05g02519 1073 ProSitePatterns DNA polymerase family B signature. 727 735 IPR017964 GO:0000166|GO:0003676
Car05g02519 1073 Gene3D Helix hairpin bin 628 680 - -
Car05g02519 1073 Gene3D DNA Polymerase, chain B, domain 1 91 259 - -
Car05g02519 1073 Gene3D - 281 499 IPR036397 GO:0003676
Car05g02519 1073 Gene3D Palm domain of DNA polymerase 555 784 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02519 Car-Chr5 70269118 70283285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02519 21 1073 Core DNA Replication Machinery Family AT5G63960 80.957 0.0 1831
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02519 K02327 - gmx:100817379 1966.04