Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02516 ATGGAAGATGAAGGTCATAGCAATCCGGCAAATGGGGTCATCACAAGCCTTGAGAGCCCTTACTCAAAAACATGCAACAAAGAACAAGATCGTTTTCTACCTATAGCCAATGTAGGCAGAATAATGAAAAAAGCTGTCCCTAGCAATGGTAAAATCTCAAAGGATGCAAAAGAGGCCGTTCAAGAATGTGTGTCTGAGTTCATCAGCTTTGTTACTGTTGAAGCCTCTGACAAATGTCAAAAGGAAAAAAGAAAGACCGTTAATGGAGATGATATTATATGGGCCATTACTACTTTAGGATTTGATGATTATGTCGATCCATTAAAATTTTATCTTCAAAAATATAAAGAGATTGAAGGTGAAAAACTTAATGTTCCAAAACAACAACGTTCGGAACAAAGGCTACAACAACAATATCATACCCAAGATCAAAATAATGTGCCTCTTTATGTTGGTGATGATCAGCTATTTTCACTTCCATTTTCTCCAAATTCAATTCAAAAACAACTTCAGCCGCAAGATCAGATCGATTCGGTGGGACAATGGCAAGAGTAA 555 0.3694 MEDEGHSNPANGVITSLESPYSKTCNKEQDRFLPIANVGRIMKKAVPSNGKISKDAKEAVQECVSEFISFVTVEASDKCQKEKRKTVNGDDIIWAITTLGFDDYVDPLKFYLQKYKEIEGEKLNVPKQQRSEQRLQQQYHTQDQNNVPLYVGDDQLFSLPFSPNSIQKQLQPQDQIDSVGQWQE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02516 184 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Car05g02516 184 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Car05g02516 184 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Car05g02516 184 MobiDBLite consensus disorder prediction 126 145 - -
Car05g02516 184 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 21 149 - -
Car05g02516 184 SUPERFAMILY Histone-fold 29 146 IPR009072 GO:0046982
Car05g02516 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Car05g02516 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Car05g02516 184 Gene3D Histone, subunit A 21 148 IPR009072 GO:0046982
Car05g02516 184 MobiDBLite consensus disorder prediction 129 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02516 Car-Chr5 70235628 70236393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02516 3 182 CCAAT-HAP3 Transcription Factor Family AT2G13570 56.604 4.88e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car05g02516 CBFD_NFYB_HMF 4.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02516 K08065 - gmx:100780647 263.848